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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1queFADFerredoxin--NADP reductase1.18.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1queFADFerredoxin--NADP reductase1.18.1.21.000
1ogiFADFerredoxin--NADP reductase1.18.1.20.649
1h42FADFerredoxin--NADP reductase1.18.1.20.647
1e62FADFerredoxin--NADP reductase1.18.1.20.640
1ogjFADFerredoxin--NADP reductase1.18.1.20.629
1e63FADFerredoxin--NADP reductase1.18.1.20.627
3vo2FADFerredoxin--NADP reductase/0.623
4bprFADFerredoxin--NADP reductase1.18.1.20.623
1bjkFADFerredoxin--NADP reductase1.18.1.20.620
4c43FADFerredoxin--NADP reductase1.18.1.20.616
1e64FADFerredoxin--NADP reductase1.18.1.20.611
1gr1FADFerredoxin--NADP reductase1.18.1.20.611
1gawFADFerredoxin/0.608
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.605
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.599
2b5oFADFerredoxin--NADP reductase1.18.1.20.597
1gjrFADFerredoxin--NADP reductase1.18.1.20.595
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.594
1qh0FADFerredoxin--NADP reductase1.18.1.20.594
1qgyFADFerredoxin--NADP reductase1.18.1.20.592
3zbtFADFerredoxin--NADP reductase1.18.1.20.590
1h85FADFerredoxin--NADP reductase1.18.1.20.587
3zc3FADFerredoxin--NADP reductase1.18.1.20.585
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.582
2rc6FADFerredoxin--NADP reductase/0.582
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.581
1go2FADFerredoxin--NADP reductase1.18.1.20.573
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.568
1sm4FADFerredoxin--NADP reductase/0.567
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.566
1gaqFADFerredoxin/0.562
3w5uFADFerredoxin/0.554
1qgzFADFerredoxin--NADP reductase1.18.1.20.552
1w35FADFerredoxin--NADP reductase1.18.1.20.549
3qfcFADNADPH--cytochrome P450 reductase/0.538
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.529
1w87FADFerredoxin--NADP reductase1.18.1.20.524
3fpkFADFerredoxin-NADP reductase/0.523
1ewyFADFerredoxin--NADP reductase1.18.1.20.522
3qe2FADNADPH--cytochrome P450 reductase/0.521
1b2rFADFerredoxin--NADP reductase1.18.1.20.520
2rc5FADFerredoxin--NADP reductase/0.507
3jqrFADFerredoxin--NADP reductase, apicoplast/0.507
1amoFADNADPH--cytochrome P450 reductase/0.506
4y9uFADNADPH--cytochrome P450 reductase/0.504
2bpoFADNADPH--cytochrome P450 reductase/0.497
3qfsFADNADPH--cytochrome P450 reductase/0.493
4yauFADNADPH--cytochrome P450 reductase/0.493
2ok8FADFerredoxin--NADP reductase, apicoplast/0.492
3qftFADNADPH--cytochrome P450 reductase/0.488
2piaFMNPhthalate dioxygenase reductase/0.482
4yaoFADNADPH--cytochrome P450 reductase/0.482
1j9zFADNADPH--cytochrome P450 reductase/0.475
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.471
3busSAHDemethylrebeccamycin-D-glucose O-methyltransferase/0.470
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.467
2vyqFADFerredoxin--NADP reductase1.18.1.20.466
4bfxZVXPantothenate kinase2.7.1.330.466
1w34FADFerredoxin--NADP reductase1.18.1.20.465
3ojxFADNADPH--cytochrome P450 reductase/0.462
2ptfFMNUncharacterized protein MTH_863/0.461
4b4vL34Bifunctional protein FolD/0.461
4bfvZVVPantothenate kinase2.7.1.330.461
3ojwFMNNADPH--cytochrome P450 reductase/0.460
4y9rFADNADPH--cytochrome P450 reductase/0.460
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.458
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.458
4yafFADNADPH--cytochrome P450 reductase/0.458
5a4vQUEGlutathione S-transferase F22.5.1.180.457
3kp4MIITranscriptional regulator TcaR/0.456
4rvfTYDD-mycarose 3-C-methyltransferase/0.456
4wx2F6FTryptophan synthase alpha chain/0.456
4wx2F6FTryptophan synthase beta chain4.2.1.200.456
4j7hTRHPCZA361.3/0.455
1tllFADNitric oxide synthase, brain1.14.13.390.454
1x1dSAHC-20 methyltransferase/0.454
2vn1FK5Peptidylprolyl isomerase/0.454
4rkdKETAminotransferase/0.454
1diaL24C-1-tetrahydrofolate synthase, cytoplasmic1.5.1.50.453
1xddAAYIntegrin alpha-L/0.453
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.453
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.451
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.451
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.451
5c6cCMPcGMP-dependent protein kinase 22.7.11.120.451
2a57CRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.449
4acxS8ZBeta-secretase 13.4.23.460.449
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.449
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.448
3ojwFADNADPH--cytochrome P450 reductase/0.447
3wleNAD(R)-specific carbonyl reductase/0.447
4bfuZVUPantothenate kinase2.7.1.330.447
1enoNADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic1.3.1.90.446
3qwbNDPProbable quinone oxidoreductase1.6.5.50.446
1h60STRPentaerythritol tetranitrate reductase/0.445
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.445
4b2gV1NUncharacterized protein/0.445
1s4oGDPGlycolipid 2-alpha-mannosyltransferase/0.444
5ah5LSSLeucine--tRNA ligase/0.444
1euyQSIGlutamine--tRNA ligase6.1.1.180.443
1gky5GPGuanylate kinase2.7.4.80.443
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.443
2g8yNADHydroxycarboxylate dehydrogenase B/0.443
2re8GSUGlutamine--tRNA ligase6.1.1.180.443
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.443
1ja1FMNNADPH--cytochrome P450 reductase/0.442
1vbiNADMalate/L-lactate dehydrogenase family protein/0.442
1x1bSAHC-20 methyltransferase/0.442
4bfyZVYPantothenate kinase2.7.1.330.442
4k1xFADNADPH:ferredoxin reductase/0.442
5dp2NAPCurF/0.442
2zevB71Geranylgeranyl pyrophosphate synthase/0.441
4b4w9L9Bifunctional protein FolD/0.441
4jlj1NMDeoxycytidine kinase2.7.1.740.440