sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1qti | GNT | Acetylcholinesterase | 3.1.1.7 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1qti | GNT | Acetylcholinesterase | 3.1.1.7 | 1.000 | |
| 1w4l | GL8 | Acetylcholinesterase | 3.1.1.7 | 0.725 | |
| 2cek | N8T | Acetylcholinesterase | 3.1.1.7 | 0.722 | |
| 2w6c | BM4 | Acetylcholinesterase | 3.1.1.7 | 0.694 | |
| 1odc | A8B | Acetylcholinesterase | 3.1.1.7 | 0.684 | |
| 1w6r | GNT | Acetylcholinesterase | 3.1.1.7 | 0.668 | |
| 1dx6 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.654 | |
| 1gpn | HUB | Acetylcholinesterase | 3.1.1.7 | 0.653 | |
| 1zgb | A1E | Acetylcholinesterase | 3.1.1.7 | 0.652 | |
| 3zv7 | NHG | Acetylcholinesterase | 3.1.1.7 | 0.637 | |
| 1h22 | E10 | Acetylcholinesterase | 3.1.1.7 | 0.636 | |
| 1u65 | CP0 | Acetylcholinesterase | 3.1.1.7 | 0.636 | |
| 1w76 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.625 | |
| 2ckm | AA7 | Acetylcholinesterase | 3.1.1.7 | 0.625 | |
| 4m0f | 1YK | Acetylcholinesterase | 3.1.1.7 | 0.619 | |
| 2xuo | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.616 | |
| 2xuf | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.606 | |
| 1eve | E20 | Acetylcholinesterase | 3.1.1.7 | 0.603 | |
| 4arb | C57 | Acetylcholinesterase | 3.1.1.7 | 0.600 | |
| 1vot | HUP | Acetylcholinesterase | 3.1.1.7 | 0.595 | |
| 2j3q | TFL | Acetylcholinesterase | 3.1.1.7 | 0.595 | |
| 4ey6 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.595 | |
| 2xuh | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.592 | |
| 2xuk | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.587 | |
| 4b7z | Q4Q | Acetylcholinesterase | 3.1.1.7 | 0.585 | |
| 2ha6 | SCK | Acetylcholinesterase | 3.1.1.7 | 0.581 | |
| 2whq | HI6 | Acetylcholinesterase | 3.1.1.7 | 0.579 | |
| 2jf0 | HBP | Acetylcholinesterase | 3.1.1.7 | 0.576 | |
| 2xug | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.576 | |
| 2gyu | HI6 | Acetylcholinesterase | 3.1.1.7 | 0.568 | |
| 1e66 | HUX | Acetylcholinesterase | 3.1.1.7 | 0.567 | |
| 2xuq | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.567 | |
| 4ara | C56 | Acetylcholinesterase | 3.1.1.7 | 0.567 | |
| 1zgc | A2E | Acetylcholinesterase | 3.1.1.7 | 0.563 | |
| 2xui | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.561 | |
| 2xup | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.557 | |
| 1ut6 | A8N | Acetylcholinesterase | 3.1.1.7 | 0.556 | |
| 4ey7 | E20 | Acetylcholinesterase | 3.1.1.7 | 0.556 | |
| 1q83 | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.554 | |
| 1q84 | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.546 | |
| 2gyw | OBI | Acetylcholinesterase | 3.1.1.7 | 0.546 | |
| 2xuj | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.545 | |
| 2cmf | F11 | Acetylcholinesterase | 3.1.1.7 | 0.523 | |
| 1p0p | BCH | Cholinesterase | 3.1.1.8 | 0.486 | |
| 1i5r | HYC | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.481 | |
| 2fap | RAD | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.477 | |
| 2fap | RAD | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.477 | |
| 2wu4 | HBP | Acetylcholinesterase | 3.1.1.7 | 0.475 | |
| 1nsg | RAD | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.470 | |
| 1nsg | RAD | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.470 | |
| 1jqd | SAH | Histamine N-methyltransferase | 2.1.1.8 | 0.468 | |
| 3uzw | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.467 | |
| 2a0x | DIH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.464 | |
| 4tvj | 09L | Poly [ADP-ribose] polymerase 2 | 2.4.2.30 | 0.460 | |
| 3jsw | JAR | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.458 | |
| 4b14 | 4XB | Glycylpeptide N-tetradecanoyltransferase | / | 0.458 | |
| 4q0k | GA3 | Phytohormone-binding protein | / | 0.458 | |
| 1ex7 | 5GP | Guanylate kinase | 2.7.4.8 | 0.457 | |
| 2a58 | RBF | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.455 | |
| 4a16 | H34 | Acetylcholinesterase | 3.1.1.7 | 0.455 | |
| 2gv8 | NDP | Thiol-specific monooxygenase | 1.14.13 | 0.453 | |
| 4b11 | 7I1 | Glycylpeptide N-tetradecanoyltransferase | / | 0.453 | |
| 1tco | FK5 | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.452 | |
| 1tco | FK5 | Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform | 3.1.3.16 | 0.452 | |
| 2v16 | C47 | Renin | 3.4.23.15 | 0.450 | |
| 3b8x | G4M | Putative pyridoxamine 5-phosphate-dependent dehydrase | / | 0.450 | |
| 4drj | RAP | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.449 | |
| 4drj | RAP | Peptidyl-prolyl cis-trans isomerase FKBP4 | 5.2.1.8 | 0.449 | |
| 1nqv | LMZ | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.448 | |
| 3s8p | SAM | Histone-lysine N-methyltransferase KMT5B | 2.1.1.43 | 0.447 | |
| 2cda | NAP | Glucose 1-dehydrogenase | / | 0.446 | |
| 3dys | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.446 | |
| 3e34 | ED1 | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha | / | 0.446 | |
| 3e34 | ED1 | Protein farnesyltransferase subunit beta | 2.5.1.58 | 0.446 | |
| 4rxq | DUT | Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 3.1.5 | 0.445 | |
| 2xi4 | AFT | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 3fap | ARD | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.444 | |
| 3fap | ARD | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.444 | |
| 4b12 | C23 | Glycylpeptide N-tetradecanoyltransferase | / | 0.444 | |
| 1z71 | L17 | Prothrombin | 3.4.21.5 | 0.441 | |
| 3tfu | PL8 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | 2.6.1.62 | 0.441 | |
| 3vsw | R31 | Renin | 3.4.23.15 | 0.441 | |
| 3vyf | VYF | Renin | 3.4.23.15 | 0.441 | |
| 4a31 | 2CB | Glycylpeptide N-tetradecanoyltransferase | / | 0.441 | |
| 1h60 | STR | Pentaerythritol tetranitrate reductase | / | 0.440 | |
| 3clu | FAD | Electron transfer flavoprotein subunit alpha | / | 0.440 | |
| 4b68 | FAD | L-ornithine N(5)-monooxygenase | / | 0.440 | |
| 4kq6 | DLZ | 6,7-dimethyl-8-ribityllumazine synthase | / | 0.440 |