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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.291.000
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.592
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.586
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.574
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.557
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.553
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.540
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.531
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.528
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.522
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.514
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.514
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.509
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.500
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.493
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.489
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.488
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.478
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.474
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.465
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.460
3oafOAGDihydrofolate reductase1.5.1.30.458
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.454
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.453
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.452
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.450
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.448
2r0cFADPutative FAD-monooxygenase/0.445
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.444
4f7iNAD3-isopropylmalate dehydrogenase1.1.1.850.444
5cccDDFDihydrofolate reductase1.5.1.30.444
1r2jFADFkbI/0.443
3eigMTXDihydrofolate reductase1.5.1.30.443
3k145352-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/0.442
1bsvNDPGDP-L-fucose synthase/0.440
1q6nP90Tyrosine-protein phosphatase non-receptor type 13.1.3.480.440