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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.13

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.131.000
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.604
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.568
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.548
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.539
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.538
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.536
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.531
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.531
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.529
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.522
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.520
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.515
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.514
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.509
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.506
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.506
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.506
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.505
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.504
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.499
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.499
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.498
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.497
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.488
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.487
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.483
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.483
3qv1NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.479
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.479
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.477
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.476
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.466
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.454
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.453
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.452
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.451
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.449
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.445