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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1n2iPAJPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1n2iPAJPantothenate synthetase6.3.2.11.000
3cow52HPantothenate synthetase6.3.2.10.659
1n2hPAJPantothenate synthetase6.3.2.10.640
3coy53HPantothenate synthetase6.3.2.10.624
3ioeA7DPantothenate synthetase6.3.2.10.582
3ivxFG6Pantothenate synthetase6.3.2.10.582
3coz54HPantothenate synthetase6.3.2.10.577
1n2eAPCPantothenate synthetase6.3.2.10.540
3isjA8DPantothenate synthetase6.3.2.10.536
3iocA5DPantothenate synthetase6.3.2.10.533
3ivgFG5Pantothenate synthetase6.3.2.10.528
2x3fAPCPantothenate synthetase/0.522
5hg0SAMPantothenate synthetase/0.522
1n2gAPCPantothenate synthetase6.3.2.10.500
3ag6PAJPantothenate synthetase/0.500
1n2jPAFPantothenate synthetase6.3.2.10.486
3imeBZ2Pantothenate synthetase6.3.2.10.475
3iobA4DPantothenate synthetase6.3.2.10.472
3ivcFG4Pantothenate synthetase6.3.2.10.465
3iodA6DPantothenate synthetase6.3.2.10.459
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.457
3zxiTYATyrosine--tRNA ligase, mitochondrial6.1.1.10.448
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.443