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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1kbjFMNCytochrome b2, mitochondrial1.1.2.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1kbjFMNCytochrome b2, mitochondrial1.1.2.31.000
1kbiFMNCytochrome b2, mitochondrial1.1.2.30.649
1fcbFMNCytochrome b2, mitochondrial1.1.2.30.632
1szfFMNCytochrome b2, mitochondrial1.1.2.30.603
1szgFNSCytochrome b2, mitochondrial1.1.2.30.589
1goxFMNPeroxisomal (S)-2-hydroxy-acid oxidase1.1.3.150.580
1qcwFNSCytochrome b2, mitochondrial1.1.2.30.568
2e77FMNLactate oxidase/0.568
3giyFMN(S)-mandelate dehydrogenase1.1.99.310.564
2nliFMNLactate oxidase/0.560
2oz0FMNCytochrome b2, mitochondrial1.1.2.30.559
5ebuFMNLactate oxidase/0.547
2j6xFMNLactate oxidase/0.542
4rjeFNRLactate oxidase/0.541
4yl2FMNLactate oxidase/0.518
1bwlFMNNADPH dehydrogenase 11.6.99.10.512
1z44FMNNADPH dehydrogenase/0.501
1icqFMN12-oxophytodienoate reductase 11.3.1.420.499
3hf3FMNChromate reductase/0.498
1h50FMNPentaerythritol tetranitrate reductase/0.497
1h63FMNPentaerythritol tetranitrate reductase/0.497
3f03FMNPentaerythritol tetranitrate reductase/0.497
1bwkFMNNADPH dehydrogenase 11.6.99.10.495
3p74FMNPentaerythritol tetranitrate reductase/0.495
2zfaFMNLactate oxidase/0.493
1h51FMNPentaerythritol tetranitrate reductase/0.488
3p62FMNPentaerythritol tetranitrate reductase/0.488
4qaiFMNNADPH dehydrogenase/0.488
3p8jFMNPentaerythritol tetranitrate reductase/0.487
2abbFMNPentaerythritol tetranitrate reductase/0.479
3p67FMNPentaerythritol tetranitrate reductase/0.477
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.470
2anb5GPGuanylate kinase2.7.4.80.469
4awtFMNNADH:flavin oxidoreductase Sye1/0.469
2du2FMNLactate oxidase/0.468
3p84FMNPentaerythritol tetranitrate reductase/0.468
4rnwFMNNADPH dehydrogenase 11.6.99.10.468
1vyrFMNPentaerythritol tetranitrate reductase/0.467
2x7hPFNProstaglandin reductase 310.466
3p8iFMNPentaerythritol tetranitrate reductase/0.466
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.464
4rnxFMNNADPH dehydrogenase 11.6.99.10.464
1xddAAYIntegrin alpha-L/0.462
3b70NAPEnoyl reductase LovC10.462
4h6kFMNNADPH dehydrogenase 11.6.99.10.460
4tmbFMNOld yellow enzyme/0.460
1xe65FPPlasmepsin-23.4.23.390.459
4df2FMNNADPH dehydrogenase/0.459
4m5pFMNNADPH dehydrogenase/0.459
2gjnFMNNitronate monooxygenase1.13.12.160.458
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.457
3p82FMNPentaerythritol tetranitrate reductase/0.456
4e2bFMNDehydrogenase/0.455
1icsFMN12-oxophytodienoate reductase 11.3.1.420.454
1p52ADPArginine kinase2.7.3.30.453
2c54NADGDP-mannose 3,5-epimerase5.1.3.180.452
4xw4ANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.452
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.451
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.451
4rnuFMNNADPH dehydrogenase 11.6.99.10.451
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.450
4k7yFMNNADPH dehydrogenase 11.6.99.10.450
2fxv5GPXanthine phosphoribosyltransferase2.4.2.220.449
2is0I03Beta-secretase 13.4.23.460.449
4uthFMNXenobiotic reductase/0.449
2o7oDXTTetracycline repressor protein class D/0.448
3tr05GPGuanylate kinase/0.448
4tmcFMNOld yellow enzyme/0.448
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.447
1oyaFMNNADPH dehydrogenase 11.6.99.10.446
1oycFMNNADPH dehydrogenase 11.6.99.10.446
1w0kADPATP synthase subunit alpha, mitochondrial/0.446
1w0kADPATP synthase subunit beta, mitochondrial3.6.3.140.446
2qimZEAClass 10 plant pathogenesis-related protein/0.446
2rlcCHDCholoylglycine hydrolase3.5.1.240.446
2xpwOTCTetracycline repressor protein class D/0.446
4ihl1F514-3-3 protein zeta/delta/0.446
1adfTADAlcohol dehydrogenase E chain1.1.1.10.445
3enkUPGUDP-glucose 4-epimerase/0.445
1vbiNADMalate/L-lactate dehydrogenase family protein/0.444
2f3rG5PGuanylate kinase2.7.4.80.444
5fklTDCTetracycline repressor protein class D/0.444
2gouFMNNADH:flavin oxidoreductase Sye1/0.443
3tjlFMNNADPH dehydrogenase/0.441
4hp8NAP2-deoxy-D-gluconate 3-dehydrogenase/0.441
4c13UMLUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase/0.440