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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1i2bNADUDP-sulfoquinovose synthase, chloroplastic3.13.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1i2bNADUDP-sulfoquinovose synthase, chloroplastic3.13.1.11.000
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.499
5jlaNADPutative short-chain dehydrogenase/reductase/0.495
2gdzNAD15-hydroxyprostaglandin dehydrogenase [NAD(+)]1.1.1.1410.487
3sx2NADUncharacterized protein/0.484
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.484
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.481
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.480
4yagNAIC alpha-dehydrogenase/0.470
2wsbNADGalactitol dehydrogenase/0.469
2p5uNADUDP-glucose 4-epimerase/0.467
1i3lNADUDP-glucose 4-epimerase/0.466
3d3wNAPL-xylulose reductase1.1.1.100.466
1naiNADUDP-glucose 4-epimerase5.1.3.20.464
1kvrNADUDP-glucose 4-epimerase5.1.3.20.463
4yaiNAIC alpha-dehydrogenase/0.463
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.458
3pgxNADUncharacterized NAD-dependent oxidoreductase MAP_4146/0.457
1mg5NAIAlcohol dehydrogenase1.1.1.10.456
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.456
1iy8NADLevodione reductase/0.454
1f8wFADNADH peroxidase1.11.1.10.453
4gh5NADShort-chain dehydrogenase/reductase SDR/0.453
2dteNAIGlucose 1-dehydrogenase related protein/0.451
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.451
1sbyNADAlcohol dehydrogenase1.1.1.10.450
1u7tTDT3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.449
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.449
1x7gNAPPutative ketoacyl reductase1.3.10.448
3nugNADPyridoxal 4-dehydrogenase1.1.1.1070.448
1ae1NAPTropinone reductase 1/0.447
5ig2NADShort-chain dehydrogenase/reductase SDR/0.447
3qwfNAP17beta-hydroxysteroid dehydrogenase/0.446
3sjuNDPKeto reductase/0.446
3rj9NADAlcohol dehydrogenase1.1.1.10.445
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.444
3s55NADPutative short-chain dehydrogenase/reductase/0.444
1wntNAPL-xylulose reductase1.1.1.100.443
1e3sNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.442
1ipeNDPTropinone reductase 21.1.1.2360.441
4lisNADUDP-glucose 4-epimerase (Eurofung)/0.441
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.440
4ej0NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.440