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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/1.000
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.556
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.548
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.548
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.535
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.532
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.527
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.527
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.520
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.518
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.518
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.516
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.514
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.511
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.507
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase/0.504
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.502
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.501
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.499
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.496
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.494
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.492
1vc2NADGlyceraldehyde-3-phosphate dehydrogenase/0.491
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.488
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.486
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.485
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.482
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.481
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.477
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.475
1szjNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.473
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.469
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.467
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.466
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.466
2d2iNAPGlyceraldehyde-3-phosphate dehydrogenase/0.460
1zrzBI1Protein kinase C iota type2.7.11.130.450
3pymNADGlyceraldehyde-3-phosphate dehydrogenase 31.2.1.120.450
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.449
2ft9CHDFatty acid-binding protein 2, liver/0.446
2b4rNADGlyceraldehyde-3-phosphate dehydrogenase/0.445
5d3qGDPDynamin-13.6.5.50.444
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/0.442
3qt62P0Mevalonate diphosphate decarboxylase/0.442
2cy0NAPShikimate dehydrogenase (NADP(+))/0.440
3umvFADDeoxyribodipyrimidine photo-lyase4.1.99.30.440