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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1h83FADPolyamine oxidase1.5.3.14

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1h83FADPolyamine oxidase1.5.3.141.000
3kpfFADPolyamine oxidase1.5.3.140.619
1h81FADPolyamine oxidase1.5.3.140.568
1xpqFADPolyamine oxidase FMS1/0.547
4gdpFADPolyamine oxidase FMS1/0.538
3bi5FADPolyamine oxidase FMS1/0.535
4fwjFADLysine-specific histone demethylase 1B10.533
2hkoFADLysine-specific histone demethylase 1A10.526
3bi2FADPolyamine oxidase FMS1/0.525
1z6lFADPolyamine oxidase FMS1/0.521
3cndFADPolyamine oxidase FMS1/0.519
4gutFADLysine-specific histone demethylase 1B10.518
2yg4FADPutrescine oxidase/0.513
3cn8FADPolyamine oxidase FMS1/0.508
2iw5FADLysine-specific histone demethylase 1A10.507
4echFADPolyamine oxidase FMS1/0.507
2vvlFADMonoamine oxidase N1.4.3.40.504
2yg5FADPutrescine oxidase/0.501
2dw4FADLysine-specific histone demethylase 1A10.498
4fweFADLysine-specific histone demethylase 1B10.495
4xbfFADLysine-specific histone demethylase 1A10.492
3cntFADPolyamine oxidase FMS1/0.490
3k7tFAD6-hydroxy-L-nicotine oxidase/0.488
3we0FADLysine 2-monooxygenase/0.481
2uxxFAJLysine-specific histone demethylase 1A10.480
3k7mFAD6-hydroxy-L-nicotine oxidase/0.480
4guuFA9Lysine-specific histone demethylase 1B10.469
3zdnFADMonoamine oxidase N1.4.3.40.467
5l3dFADLysine-specific histone demethylase 1A10.467
2yg3FADPutrescine oxidase/0.465
3rhaFDAPutrescine oxidase/0.457
5iqdGNPBifunctional AAC/APH2.3.10.457
1rsgFADPolyamine oxidase FMS1/0.454
3pqbVGPPutative oxidoreductase/0.448
2yg7FADPutrescine oxidase/0.446
2e1mFADL-glutamate oxidase/0.443
5iqaGNPBifunctional AAC/APH2.3.10.442