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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1h61PDNPentaerythritol tetranitrate reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1h61PDNPentaerythritol tetranitrate reductase/1.000
1h60STRPentaerythritol tetranitrate reductase/0.630
2abaSTRPentaerythritol tetranitrate reductase/0.611
1h62ANBPentaerythritol tetranitrate reductase/0.510
2g226IGRenin3.4.23.150.483
2g1s4IGRenin3.4.23.150.479
3oqkS52Renin3.4.23.150.477
2g5w8PG12-oxophytodienoate reductase 31.3.1.420.473
3kftNADPentaerythritol tetranitrate reductase/0.470
2ikuLIYRenin3.4.23.150.468
3oagLPQRenin3.4.23.150.465
3d91REMRenin3.4.23.150.460
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.451
1bil0IURenin3.4.23.150.450
1x1bSAHC-20 methyltransferase/0.450
2iko7IGRenin3.4.23.150.450
3g70A5TRenin3.4.23.150.449
3own3OWRenin3.4.23.150.449
2v16C47Renin3.4.23.150.448
3g6zA7TRenin3.4.23.150.448
3oadLPORenin3.4.23.150.448
1q84TZ4Acetylcholinesterase3.1.1.70.446
3g72A6TRenin3.4.23.150.446
4z61ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.446
1egeFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.445
2fs4PZ1Renin3.4.23.150.445
2g1n1IGRenin3.4.23.150.444
1gvrTNLPentaerythritol tetranitrate reductase/0.442
2lfoGCHFatty acid-binding protein, liver/0.442
2q85973UDP-N-acetylenolpyruvoylglucosamine reductase1.3.1.980.440