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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1gj4132Prothrombin3.4.21.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1gj4132Prothrombin3.4.21.51.000
1o2g696Prothrombin3.4.21.50.639
1gj5130Prothrombin3.4.21.50.630
1o5gCR9Prothrombin3.4.21.50.602
1ypjUIBProthrombin3.4.21.50.573
3c1kT15Prothrombin3.4.21.50.568
2a2xNA9Prothrombin3.4.21.50.566
2cn0F25Prothrombin3.4.21.50.563
2bvs2CEProthrombin3.4.21.50.560
4lxb7R9Prothrombin3.4.21.50.557
1d3pBT3Prothrombin3.4.21.50.556
2gdeSN3Prothrombin3.4.21.50.552
4e7r0NWProthrombin3.4.21.50.552
4ayv9MQProthrombin3.4.21.50.551
1ypgUIRProthrombin3.4.21.50.547
1ta6177Prothrombin3.4.21.50.543
2jh5895Prothrombin3.4.21.50.538
1d6w00RProthrombin3.4.21.50.535
2jh6894Prothrombin3.4.21.50.533
4hfp15UProthrombin3.4.21.50.533
2cf8ESHProthrombin3.4.21.50.529
4ayy9MXProthrombin3.4.21.50.528
4loy6XSProthrombin3.4.21.50.525
1t4v14AProthrombin3.4.21.50.524
1mu8CDBProthrombin3.4.21.50.523
2v3oI26Prothrombin3.4.21.50.517
1d9i00PProthrombin3.4.21.50.514
1uvsI11Prothrombin3.4.21.50.514
1c4vIH2Prothrombin3.4.21.50.512
2zhf49UProthrombin3.4.21.50.512
1d4pBPPProthrombin3.4.21.50.508
2zfr46UProthrombin3.4.21.50.508
1ghv120Prothrombin3.4.21.50.507
1ypmRA4Prothrombin3.4.21.50.507
4ax9N5NProthrombin3.4.21.50.507
2zhe13UProthrombin3.4.21.50.504
1t4u81AProthrombin3.4.21.50.502
3qwc98PProthrombin3.4.21.50.501
1mu6CDAProthrombin3.4.21.50.497
2zi224UProthrombin3.4.21.50.497
1w7gMIUProthrombin3.4.21.50.496
2zda32UProthrombin3.4.21.50.496
1z71L17Prothrombin3.4.21.50.492
1d3dBZTProthrombin3.4.21.50.486
3egkM18Prothrombin3.4.21.50.485
1sb1165Prothrombin3.4.21.50.484
1zgi382Prothrombin3.4.21.50.484
2ziq26UProthrombin3.4.21.50.484
2jh0701Prothrombin3.4.21.50.483
2r2mI50Prothrombin3.4.21.50.480
3dhk23UProthrombin3.4.21.50.479
1riwOSCProthrombin3.4.21.50.476
3qdzPRO_ALA_PRO_ARGProthrombin3.4.21.50.476
1ypkCCRProthrombin3.4.21.50.475
2anmCDOProthrombin3.4.21.50.474
1jwtBLIProthrombin3.4.21.50.473
1bcuPRLProthrombin3.4.21.50.472
4rn615UProthrombin3.4.21.50.470
4az29MUProthrombin3.4.21.50.467
2zfq45UProthrombin3.4.21.50.463
2bdyUNBProthrombin3.4.21.50.462
2zc922UProthrombin3.4.21.50.461
5f8eSAHPossible transcriptional regulatory protein/0.460
2zhw12UProthrombin3.4.21.50.459
1o0d163Prothrombin3.4.21.50.457
1c5nESIProthrombin3.4.21.50.454
1zsk421Coagulation factor XI3.4.21.270.451
2zhq27UProthrombin3.4.21.50.451
3ig6438Urokinase-type plasminogen activator3.4.21.730.451
2uuk897Prothrombin3.4.21.50.450
2zgx29UProthrombin3.4.21.50.450
2vivVG2Urokinase-type plasminogen activator3.4.21.730.449
3a1cACPProbable copper-exporting P-type ATPase A3.6.3.540.449
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.446
4a6nFADTetX family tetracycline inactivation enzyme/0.444
1ae8AZLProthrombin3.4.21.50.443
2xluNA7Putative flavin-containing monooxygenase/0.443
2zg050UProthrombin3.4.21.50.443
1afeALZProthrombin3.4.21.50.440
4fue7UPUrokinase-type plasminogen activator3.4.21.730.440