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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ek5NADUDP-glucose 4-epimerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ek5NADUDP-glucose 4-epimerase/1.000
1naiNADUDP-glucose 4-epimerase5.1.3.20.534
1nahNADUDP-glucose 4-epimerase5.1.3.20.506
1i3lNADUDP-glucose 4-epimerase/0.498
4lisNADUDP-glucose 4-epimerase (Eurofung)/0.466
1kvrNADUDP-glucose 4-epimerase5.1.3.20.465
1ae1NAPTropinone reductase 1/0.443
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.442
5jlaNADPutative short-chain dehydrogenase/reductase/0.441