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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1djnADPTrimethylamine dehydrogenase1.5.8.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1djnADPTrimethylamine dehydrogenase1.5.8.21.000
1djqADPTrimethylamine dehydrogenase1.5.8.20.898
2tmdADPTrimethylamine dehydrogenase1.5.8.20.775
1o94ADPTrimethylamine dehydrogenase1.5.8.20.609
1w4xFADPhenylacetone monooxygenase1.14.13.920.478
4b69FADL-ornithine N(5)-monooxygenase/0.478
4bk3FADProbable salicylate monooxygenase/0.474
3cgeFADCoenzyme A disulfide reductase/0.473
2zzcFADThioredoxin reductase 1, cytoplasmic1.8.1.90.469
4ntdFADThioredoxin reductase/0.467
3k30ADPHistamine dehydrogenase/0.463
1gesFADGlutathione reductase1.8.1.70.461
4tlxFDAKtzI/0.461
2ylsFADPhenylacetone monooxygenase1.14.13.920.459
3f8rNAPNADH oxidase/thioredoxin reductase/0.459
1x7dNADPutative ornithine cyclodeaminase/0.457
2ch6ADPN-acetyl-D-glucosamine kinase2.7.1.590.457
2zz0FADThioredoxin reductase 1, cytoplasmic1.8.1.90.456
3fpzAHZThiamine thiazole synthase/0.454
2c3cFAD2-oxopropyl-CoM reductase, carboxylating1.8.1.50.453
2c3dFAD2-oxopropyl-CoM reductase, carboxylating1.8.1.50.453
2ylzFADPhenylacetone monooxygenase1.14.13.920.451
3s5wFADL-ornithine N(5)-monooxygenase/0.451
2bryFAD[F-actin]-methionine sulfoxide oxidase MICAL11.14.130.448
3uoxFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.447
3uoyFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.447
2rcyNAPPyrroline-5-carboxylate reductase/0.446
2yr4FADPhenylalanine 2-monooxygenase precursor1.13.12.90.446
4opiFDAConserved Archaeal protein/0.446
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.445
4tm0FADKtzI/0.445
2gewFADCholesterol oxidase1.1.3.60.443
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.443
4y9qC2EUncharacterized protein/0.443
3wv7ADPHmd co-occurring protein HcgE/0.441
2q0lFADThioredoxin reductase1.8.1.90.440
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.440
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440
5jlaNADPutative short-chain dehydrogenase/reductase/0.440