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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5xr8 FMN Cannabinoid receptor 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5xr8 FMNCannabinoid receptor 1 / 1.075
5tgz FMNCannabinoid receptor 1 / 0.838
1c7f FMNFlavodoxin / 0.817
1xyv FMNFlavodoxin / 0.810
1ahn FMNFlavodoxin 1 / 0.805
1j9g FMNFlavodoxin / 0.804
1j8q FMNFlavodoxin / 0.783
5xra FMNCannabinoid receptor 1 / 0.783
1akr FMNFlavodoxin / 0.780
1wsb FMNFlavodoxin / 0.780
1czn FMNFlavodoxin / 0.778
1xyy FMNFlavodoxin / 0.778
2fx2 FMNFlavodoxin / 0.776
2v5u FMNFlavodoxin / 0.774
3esz FMNFlavodoxin / 0.773
1akw FMNFlavodoxin / 0.765
3f90 FMNFlavodoxin / 0.764
1fx1 FMNFlavodoxin / 0.763
1azl FMNFlavodoxin / 0.744
1ofv FMNFlavodoxin / 0.742
3n39 FMNProtein NrdI / 0.729
3kap FMNFlavodoxin / 0.726
4oxx FMNCindoxin / 0.720
3f6r FMNFlavodoxin / 0.717
3f6s FMNFlavodoxin / 0.715
1amo FMNNADPH--cytochrome P450 reductase / 0.714
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.713
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.711
1aku FMNFlavodoxin / 0.705
2mok FMNFlavodoxin 1 / 0.703
4y7c FMNNADPH--cytochrome P450 reductase / 0.703
2v5v FMNFlavodoxin / 0.701
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.701
3esy FMNFlavodoxin / 0.693
2fcr FMNFlavodoxin / 0.691
4fx2 FMNFlavodoxin / 0.690
1ycf FMNNitric oxide reductase 1 0.689
1fue FMNFlavodoxin / 0.687
1ja0 FMNNADPH--cytochrome P450 reductase / 0.687
2ohh FMNType A flavoprotein FprA 1 0.686
2ohi FMNType A flavoprotein FprA 1 0.682
4bmp FMNProtein NrdI / 0.681
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.680
2ohj FMNType A flavoprotein FprA 1 0.674
3qe2 FMNNADPH--cytochrome P450 reductase / 0.674
2z9d FMNFMN-dependent NADH-azoreductase / 0.671
1yob FMNFlavodoxin 2 / 0.670
1ja1 FMNNADPH--cytochrome P450 reductase / 0.669
1ych FMNNitric oxide reductase 1 0.669
2w5u FMNFlavodoxin / 0.669
4bmo FMNProtein NrdI / 0.668
3qfr FMNNADPH--cytochrome P450 reductase / 0.667
2bf4 FMNNADPH--cytochrome P450 reductase / 0.663
3ojw FMNNADPH--cytochrome P450 reductase / 0.661
1j9z FMNNADPH--cytochrome P450 reductase / 0.659
4yao FMNNADPH--cytochrome P450 reductase / 0.659
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.658
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.658
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.657
2bn4 FMNNADPH--cytochrome P450 reductase / 0.656
3ojx FMNNADPH--cytochrome P450 reductase / 0.654
3kaq FMNFlavodoxin / 0.652
4jic FMNGTN Reductase / 0.652