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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5kje PFB Alcohol dehydrogenase E chain 1.1.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5kje PFBAlcohol dehydrogenase E chain 1.1.1.1 0.930
4dwv PFBAlcohol dehydrogenase E chain 1.1.1.1 0.920
5cds PFBAlcohol dehydrogenase E chain 1.1.1.1 0.915
5kj6 PFBAlcohol dehydrogenase E chain 1.1.1.1 0.899
5cdt PFBAlcohol dehydrogenase E chain 1.1.1.1 0.898
5cdg PFBAlcohol dehydrogenase E chain 1.1.1.1 0.894
5kjc PFBAlcohol dehydrogenase E chain 1.1.1.1 0.893
4nfh PFBAlcohol dehydrogenase E chain 1.1.1.1 0.890
5kj1 PFBAlcohol dehydrogenase E chain 1.1.1.1 0.886
4ng5 PFBAlcohol dehydrogenase E chain 1.1.1.1 0.880
3oq6 PFBAlcohol dehydrogenase E chain 1.1.1.1 0.874
1nmd ATPMajor actin / 0.744
1wet GUNHTH-type transcriptional repressor PurR / 0.744
2d09 FLVBiflaviolin synthase CYP158A2 / 0.744
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.744
2jey HLOAcetylcholinesterase 3.1.1.7 0.744
2zs9 ADPPantothenate kinase 2.7.1.33 0.744
3f8p NADNADH oxidase/thioredoxin reductase / 0.744
3f8r NAPNADH oxidase/thioredoxin reductase / 0.744
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.744
3ypi PGHTriosephosphate isomerase 5.3.1.1 0.744
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.744
4z17 PEPEnolase / 0.744
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.744
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.660
1yra GDPGPN-loop GTPase PAB0955 / 0.660
2hs4 ACPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660