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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5k2d ZMA Adenosine receptor A2a

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5k2d ZMAAdenosine receptor A2a / 0.844
5k2b ZMAAdenosine receptor A2a / 0.827
5iu4 ZMAAdenosine receptor A2a / 0.821
4eiy ZMAAdenosine receptor A2a / 0.814
5jtb ZMAAdenosine receptor A2a / 0.814
5k2c ZMAAdenosine receptor A2a / 0.781
5iu8 6DZAdenosine receptor A2a / 0.780
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
5iub CLRAdenosine receptor A2a / 0.738
5iua 6DXAdenosine receptor A2a / 0.736
5uvi ZMAAdenosine receptor A2a / 0.723
3eml ZMAAdenosine receptor A2a / 0.711
4ug2 NGIAdenosine receptor A2a / 0.708
5k2a ZMAAdenosine receptor A2a / 0.675
4e5f 0N7Polymerase acidic protein / 0.660