Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5jqg GTP Tubulin alpha-1B chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5jqg GTPTubulin alpha-1B chain / 1.373
4ihj GTPTubulin alpha-1B chain / 1.346
4wbn GTPTubulin alpha-1B chain / 1.324
4tv9 GTPTubulin alpha-1B chain / 1.323
4zol GTPTubulin alpha-1B chain / 1.314
4o4l GTPTubulin alpha-1B chain / 1.303
4tuy GTPTubulin alpha-1B chain / 1.293
5la6 GTPTubulin alpha-1B chain / 1.275
3ryh GTPTubulin alpha chain / 1.238
5itz GTPTubulin alpha-1B chain / 1.226
4o4i GTPTubulin alpha-1B chain / 1.223
4yj2 GTPTubulin alpha-1B chain / 1.184
4iij GTPTubulin alpha-1B chain / 1.156
3cb2 GDPTubulin gamma-1 chain / 0.952
3zid GDPTubulin-like protein CetZ / 0.862
4f6r GDPTubulin beta chain / 0.848
4ffb GTPTubulin alpha-1 chain / 0.829
5la6 GDPTubulin beta-2B chain / 0.807
1w5a GTPCell division protein FtsZ 1 / 0.798
4b45 GSPTubulin-like protein CetZ2 / 0.771
4u3j GTPTubulin beta chain / 0.770
2xka GSPCell division protein FtsZ / 0.732
1z5w GTPTubulin gamma-1 chain / 0.721
1w5b GTPCell division protein FtsZ 1 / 0.717
3m0e ATPTranscriptional regulator (NtrC family) / 0.713
1wa5 GTPGTP-binding nuclear protein Ran / 0.699
2r6r GDPCell division protein FtsZ / 0.698
1fmw ATPMyosin-2 heavy chain / 0.697
1ytm ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.695
1z5v GSPTubulin gamma-1 chain / 0.695
4qm6 GTPMetallophosphoesterase / 0.695
4goj GNPADP-ribosylation factor-like protein 3 / 0.687
3fvq ATPFe(3+) ions import ATP-binding protein FbpC / 0.686
1aq2 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.680
2aky AP5Adenylate kinase / 0.675
1ky2 GNPGTP-binding protein YPT7 / 0.673
2ji7 OXTOxalyl-CoA decarboxylase 4.1.1.8 0.673
4w5j AP5Adenylate kinase / 0.672
2ywv ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase / 0.671
5i4n ATPTyrosine-protein kinase JAK2 / 0.670
2olr ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.669
3tgp GNPGTPase HRas / 0.669
2eu8 AP5Adenylate kinase / 0.667
2ji6 TPWOxalyl-CoA decarboxylase 4.1.1.8 0.667
2q3f GNPRas-related GTP-binding protein D / 0.667
3hiy UTPUncharacterized protein / 0.667
4u03 GTPCyclic GMP-AMP synthase / 0.667
1bif AGS6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 2.7.1.105 0.665
4tl7 ATPCircadian clock protein kinase KaiC 2.7.11.1 0.665
2bbw GP5Adenylate kinase 4, mitochondrial / 0.662
5ahk TPPAcetolactate synthase II, large subunit / 0.662
3vhx GTPADP-ribosylation factor 6 / 0.661
4oi4 ATPmRNA cleavage and polyadenylation factor CLP1 / 0.661
2c31 TZDOxalyl-CoA decarboxylase 4.1.1.8 0.660
2jib TPPOxalyl-CoA decarboxylase 4.1.1.8 0.659
3dkv AP5Adenylate kinase / 0.659
3vx4 ATPPutative ABC transporter, ATP-binding protein ComA / 0.658
2j5x GSPADP-ribosylation factor 6 / 0.657
2jj2 ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.656
4xj3 GTPCyclic GMP-AMP synthase / 0.655
1pow TPPPyruvate oxidase 1.2.3.3 0.654
2j0s ANPEukaryotic initiation factor 4A-III 3.6.4.13 0.651
4fvr ATPTyrosine-protein kinase JAK2 / 0.651
5eso TDP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.651
3mhy ATPNitrogen regulatory protein P-II 1 / 0.650
4dwb 0M7Farnesyl pyrophosphate synthase / 0.650
4rkf GNPRas-related protein Rab-3 / 0.650