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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5fl4 9FK Carbonic anhydrase 9 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5fl4 9FKCarbonic anhydrase 9 4.2.1.1 0.931
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4uov AZMCarbonate dehydratase / 0.721
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.721
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.697
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.692
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.690
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.688
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.683
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.682
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.676
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.674
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.673
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.673
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.672
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.672
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.668
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.668
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.666
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.665
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.664
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.662
4xiw AZMCarbonic anhydrase, alpha type / 0.662
1okn STBCarbonic anhydrase 2 4.2.1.1 0.655
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.654
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.653
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.653
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.653
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.652
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.651