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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5f12 FMN NAD(P)H dehydrogenase (quinone)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5f12 FMNNAD(P)H dehydrogenase (quinone) / 1.037
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.918
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.907
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.877
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.873
4j8p FMNFlavodoxin / 0.805
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.800
3klb FMNUncharacterized protein / 0.799
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.758
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.729
1ycg FMNNitric oxide reductase 1 0.708
2ohi FMNType A flavoprotein FprA 1 0.705
2ohj FMNType A flavoprotein FprA 1 0.702
3n3b FMNProtein NrdI / 0.700
1ycf FMNNitric oxide reductase 1 0.697
2v5u FMNFlavodoxin / 0.697
4bmp FMNProtein NrdI / 0.695
2q9u FMNA-type flavoprotein / 0.693
1ych FMNNitric oxide reductase 1 0.689
4bmo FMNProtein NrdI / 0.689
2v5v FMNFlavodoxin / 0.686
3in6 FMNUncharacterized protein / 0.686
3n39 FMNProtein NrdI / 0.686
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.681
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.680
3n3a FMNProtein NrdI / 0.680
2fcr FMNFlavodoxin / 0.679
1ofv FMNFlavodoxin / 0.674
2z9d FMNFMN-dependent NADH-azoreductase / 0.674
5xra FMNCannabinoid receptor 1 / 0.668
1wsb FMNFlavodoxin / 0.667
2w5u FMNFlavodoxin / 0.667
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.665
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.664
4r81 FMNPredicted NADH dehydrogenase / 0.663
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.663
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.662
1t5b FMNFMN-dependent NADH-azoreductase / 0.661
2bf4 FMNNADPH--cytochrome P450 reductase / 0.661
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.660
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.660
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.660
5cho FADFlavin reductase / 0.659
1fue FMNFlavodoxin / 0.658
5tgz FMNCannabinoid receptor 1 / 0.658
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.657
1eje FMNProtein MTH_152 / 0.655
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.655
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.651