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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5cns DAT Ribonucleoside-diphosphate reductase 1 subunit alpha 1.17.4.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5cns DATRibonucleoside-diphosphate reductase 1 subunit alpha 1.17.4.1 1.209
5i4n ATPTyrosine-protein kinase JAK2 / 0.701
4iwy ADPRibosomal protein S6--L-glutamate ligase / 0.670
2zbv ADNUncharacterized protein / 0.668
4cnf MTASpoU rRNA methylase / 0.667
4cng SAHSpoU rRNA methylase / 0.665
4fvr ATPTyrosine-protein kinase JAK2 / 0.664
3n0z 3ATAdenylate cyclase 2 / 0.663
2a41 ATPActin, alpha skeletal muscle / 0.662
1n2e APCPantothenate synthetase 6.3.2.1 0.661
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.659
3er9 3ATPoly(A) polymerase catalytic subunit 2.7.7.19 0.659
1i7l ATPSynapsin-2 / 0.657
1qrs ATPGlutamine--tRNA ligase 6.1.1.18 0.657
3g8d ADPBiotin carboxylase 6.3.4.14 0.657
1n75 ATPGlutamate--tRNA ligase 6.1.1.17 0.655
1qrt ATPGlutamine--tRNA ligase 6.1.1.18 0.654
2p0a ANPSynapsin-3 / 0.654
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.651
3zgz 84TLeucine--tRNA ligase / 0.650