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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5agl H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.933
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.929
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.928
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.928
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.928
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.926
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.926
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.925
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.925
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.924
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.924
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.924
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.924
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.923
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.910
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.909
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.909
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.909
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.908
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.907
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.906
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.905
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.904
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.903
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.903
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.902
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.901
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.896
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.893
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.892
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.891
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.891
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.891
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.890
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.890
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.890
3png H4BNitric oxide synthase, brain 1.14.13.39 0.890
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.890
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.889
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.889
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.889
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.889
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.889
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.888
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.888
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.888
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.888
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.888
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.888
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.887
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.887
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.887
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.886
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.885
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.884
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.884
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.884
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.879
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.878
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.876
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.876
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.875
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.875
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.873
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.873
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.873
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.873
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.871
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.870
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.869
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.867
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.866
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.866
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.863
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.863
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.861
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.859
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.858
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.857
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.856
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.856
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.854
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.854
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.854
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.854
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.853
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.852
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.852
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.852
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.852
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.849
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.847
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.847
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.840
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.837
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.834
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.830
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.829
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.828
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.806
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.778
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.774
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.756
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.753
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.752
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.737
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.719
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.711
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.702
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.702
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.698
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.690
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.669
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.654
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.653