sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5a8a | FMN | Riboflavin biosynthesis protein RibF | 2.7.1.26 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 5a8a | FMN | Riboflavin biosynthesis protein RibF | 2.7.1.26 | 1.288 | |
| 5a89 | FMN | Riboflavin biosynthesis protein RibF | 2.7.1.26 | 1.237 | |
| 1n07 | FMN | Riboflavin kinase | 2.7.1.26 | 0.719 | |
| 1nb9 | RBF | Riboflavin kinase | 2.7.1.26 | 0.710 | |
| 2v18 | FMN | Dodecin | / | 0.707 | |
| 3aty | FMN | Prostaglandin F2a synthase | / | 0.692 | |
| 5hsa | FAS | Alcohol oxidase 1 | 1.1.3.13 | 0.691 | |
| 5i39 | FAD | L-amino acid deaminase | / | 0.687 | |
| 4rnx | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.684 | |
| 4u8i | FDA | UDP-galactopyranose mutase | / | 0.684 | |
| 1gwj | FMN | Morphinone reductase | / | 0.682 | |
| 2vyx | FMN | Dodecin | / | 0.682 | |
| 5j4e | FMN | Sensory box protein | / | 0.681 | |
| 4u8m | FDA | UDP-galactopyranose mutase | / | 0.679 | |
| 5j3w | FMN | Sensory box protein | / | 0.678 | |
| 1zwl | FMN | NAD(P)H dehydrogenase (quinone) | 1.6.5.2 | 0.677 | |
| 4j8p | FMN | Flavodoxin | / | 0.676 | |
| 2v5u | FMN | Flavodoxin | / | 0.675 | |
| 3fg2 | FAD | Putative rubredoxin reductase | / | 0.675 | |
| 3ge6 | FMN | Nitroreductase | / | 0.675 | |
| 2byc | FMN | Blue-light receptor of the BLUF-family | / | 0.669 | |
| 3c3n | FMN | Dihydroorotate dehydrogenase (fumarate) | 1.3.98.1 | 0.669 | |
| 3hji | FAD | Vivid PAS protein VVD | / | 0.669 | |
| 1jqi | FAD | Short-chain specific acyl-CoA dehydrogenase, mitochondrial | / | 0.668 | |
| 1qxo | FMN | Chorismate synthase | / | 0.668 | |
| 4k7y | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.668 | |
| 4zvl | FAD | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 0.668 | |
| 2dvl | FAD | Acyl-CoA dehydrogenase | / | 0.667 | |
| 4ef8 | FMN | Dihydroorotate dehydrogenase (fumarate) | / | 0.667 | |
| 1akr | FMN | Flavodoxin | / | 0.666 | |
| 4u8l | FDA | UDP-galactopyranose mutase | / | 0.666 | |
| 4wx1 | FDA | UDP-galactopyranose mutase | / | 0.666 | |
| 4wzh | FMN | Dihydroorotate dehydrogenase (fumarate) | / | 0.666 | |
| 1vhn | FMN | tRNA-dihydrouridine synthase | / | 0.665 | |
| 2pg0 | FAD | Acyl-CoA dehydrogenase | / | 0.665 | |
| 3uth | FDA | UDP-galactopyranose mutase | / | 0.665 | |
| 4mo2 | FAD | UDP-galactopyranose mutase | / | 0.665 | |
| 1udy | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.664 | |
| 3f90 | FMN | Flavodoxin | / | 0.663 | |
| 4eo3 | FMN | Bacterioferritin comigratory protein/NADH dehydrogenase | / | 0.663 | |
| 4gde | FDA | UDP-galactopyranose mutase | / | 0.663 | |
| 1q45 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.662 | |
| 2fre | FMN | NAD(P)H-flavin oxidoreductase | / | 0.662 | |
| 3utf | FDA | UDP-galactopyranose mutase | / | 0.662 | |
| 4u8p | FDA | UDP-galactopyranose mutase | / | 0.662 | |
| 3hgr | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.661 | |
| 4e2b | FMN | Dehydrogenase | / | 0.661 | |
| 2isl | FNR | 5,6-dimethylbenzimidazole synthase | 1.13.11.79 | 0.660 | |
| 2vxa | RBF | Dodecin | / | 0.660 | |
| 4qof | FMN | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 0.660 | |
| 5jsc | FAD | Putative acyl-CoA dehydrogenase | / | 0.660 | |
| 1t6y | FMN | Riboflavin biosynthesis protein | / | 0.659 | |
| 3is2 | FAD | Vivid PAS protein VVD | / | 0.659 | |
| 3n19 | FNR | Xenobiotic reductase | / | 0.659 | |
| 4tmc | FMN | Old yellow enzyme | / | 0.659 | |
| 1ics | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.658 | |
| 2j4d | FAD | Cryptochrome DASH, chloroplastic/mitochondrial | / | 0.658 | |
| 2xnc | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.658 | |
| 5fs7 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.658 | |
| 1usc | FMN | Monooxygenase | / | 0.656 | |
| 3he3 | FAD | UDP-galactopyranose mutase | / | 0.656 | |
| 3pft | FMN | Flavin reductase | / | 0.656 | |
| 4tmb | FMN | Old yellow enzyme | / | 0.656 | |
| 1kif | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.654 | |
| 1ofv | FMN | Flavodoxin | / | 0.653 | |
| 4f07 | FAD | Styrene monooxygenase component 2 | / | 0.653 | |
| 1ep1 | FMN | Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit | 1.3.1.14 | 0.652 | |
| 1owp | FAD | Deoxyribodipyrimidine photo-lyase | 4.1.99.3 | 0.652 | |
| 3gka | FMN | N-ethylmaleimide reductase | / | 0.652 | |
| 3n3b | FMN | Protein NrdI | / | 0.652 | |
| 3qe2 | FMN | NADPH--cytochrome P450 reductase | / | 0.652 | |
| 4gu5 | FAD | Cryptochrome-1 | / | 0.652 | |
| 4nmd | FDA | Bifunctional protein PutA | / | 0.652 | |
| 4uwm | FMN | 3,6-diketocamphane 1,6 monooxygenase | 1.14.13 | 0.652 | |
| 4y9l | FAD | Acyl-CoA dehydrogenase family member 11 | / | 0.652 | |
| 3utg | FDA | UDP-galactopyranose mutase | / | 0.651 | |
| 1akw | FMN | Flavodoxin | / | 0.650 | |
| 1azl | FMN | Flavodoxin | / | 0.650 | |
| 1wsb | FMN | Flavodoxin | / | 0.650 | |
| 1z41 | FMN | NADPH dehydrogenase | / | 0.650 | |
| 4jic | FMN | GTN Reductase | / | 0.650 |