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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5a3b APR SIR2 family protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5a3b APRSIR2 family protein / 1.155
5a3c NADSIR2 family protein / 0.977
1ryi FADGlycine oxidase 1.4.3.19 0.676
4yac NAIC alpha-dehydrogenase / 0.672
1d2h SAHGlycine N-methyltransferase 2.1.1.20 0.665
4bvh AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.659
1l3i SAHProbable cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) / 0.656
1s7g APRNAD-dependent protein deacylase 2 / 0.655
4i3v NADAldehyde dehydrogenase (NAD+) / 0.655
1lvl FADDihydrolipoyl dehydrogenase 1.8.1.4 0.652