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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5a30 AGS Mitochondrial poly(A) polymerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5a30 AGSMitochondrial poly(A) polymerase / 0.887
5a2w AGSMitochondrial poly(A) polymerase / 0.757
2q66 ATPPoly(A) polymerase 2.7.7.19 0.694
4dtm DCPDNA-directed DNA polymerase / 0.682
4dto DCPDNA-directed DNA polymerase / 0.678
2b56 UTPRNA editing complex protein MP57 / 0.674
2q0g UPUPoly(A) polymerase, putative / 0.664
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660