2.750 Å
X-ray
2015-05-26
Name: | Mitochondrial poly(A) polymerase |
---|---|
ID: | F1NBW0_CHICK |
AC: | F1NBW0 |
Organism: | Gallus gallus |
Reign: | Eukaryota |
TaxID: | 9031 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 55.217 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.771 | 1005.750 |
% Hydrophobic | % Polar |
---|---|
40.27 | 59.73 |
According to VolSite |
HET Code: | AGS |
---|---|
Formula: | C10H14N5O12P3S |
Molecular weight: | 521.231 g/mol |
DrugBank ID: | DB02930 |
Buried Surface Area: | 45.82 % |
Polar Surface area: | 329.24 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
35.6272 | 2.12642 | -0.0906129 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CE2 | PHE- 224 | 3.5 | 0 | Hydrophobic |
O2B | N | SER- 226 | 3.25 | 177.19 | H-Bond (Protein Donor) |
C5' | CB | ASP- 239 | 4.46 | 0 | Hydrophobic |
C1' | CB | ALA- 327 | 4.23 | 0 | Hydrophobic |
C3' | CD1 | PHE- 372 | 4.04 | 0 | Hydrophobic |
C2' | CZ | PHE- 372 | 3.92 | 0 | Hydrophobic |
N6 | O | ILE- 480 | 3.46 | 124.2 | H-Bond (Ligand Donor) |
O2G | MG | MG- 1529 | 2.61 | 0 | Metal Acceptor |
O2B | MG | MG- 1529 | 2.14 | 0 | Metal Acceptor |