sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4zol | GTP | Tubulin alpha-1B chain |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4zol | GTP | Tubulin alpha-1B chain | / | 1.371 | |
| 5jqg | GTP | Tubulin alpha-1B chain | / | 1.314 | |
| 4ihj | GTP | Tubulin alpha-1B chain | / | 1.300 | |
| 4wbn | GTP | Tubulin alpha-1B chain | / | 1.287 | |
| 4tv9 | GTP | Tubulin alpha-1B chain | / | 1.286 | |
| 4o4l | GTP | Tubulin alpha-1B chain | / | 1.285 | |
| 5la6 | GTP | Tubulin alpha-1B chain | / | 1.272 | |
| 4tuy | GTP | Tubulin alpha-1B chain | / | 1.261 | |
| 4o4i | GTP | Tubulin alpha-1B chain | / | 1.224 | |
| 5itz | GTP | Tubulin alpha-1B chain | / | 1.205 | |
| 4yj2 | GTP | Tubulin alpha-1B chain | / | 1.181 | |
| 3ryh | GTP | Tubulin alpha chain | / | 1.155 | |
| 4iij | GTP | Tubulin alpha-1B chain | / | 1.129 | |
| 3cb2 | GDP | Tubulin gamma-1 chain | / | 0.969 | |
| 3zid | GDP | Tubulin-like protein CetZ | / | 0.852 | |
| 5la6 | GDP | Tubulin beta-2B chain | / | 0.834 | |
| 4ffb | GTP | Tubulin alpha-1 chain | / | 0.829 | |
| 4f6r | GDP | Tubulin beta chain | / | 0.809 | |
| 4b45 | GSP | Tubulin-like protein CetZ2 | / | 0.787 | |
| 1w5a | GTP | Cell division protein FtsZ 1 | / | 0.743 | |
| 1z5v | GSP | Tubulin gamma-1 chain | / | 0.727 | |
| 1w5b | GTP | Cell division protein FtsZ 1 | / | 0.706 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.704 | |
| 1z5w | GTP | Tubulin gamma-1 chain | / | 0.698 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.690 | |
| 2xka | GSP | Cell division protein FtsZ | / | 0.684 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.681 | |
| 2xul | ATP | Nitrogen regulatory protein P-II | / | 0.676 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.675 | |
| 4u3j | GTP | Tubulin beta chain | / | 0.675 | |
| 3dkv | AP5 | Adenylate kinase | / | 0.674 | |
| 3mhy | ATP | Nitrogen regulatory protein P-II 1 | / | 0.672 | |
| 5ahk | TPP | Acetolactate synthase II, large subunit | / | 0.672 | |
| 1y9d | TPP | Pyruvate oxidase | 1.2.3.3 | 0.666 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.666 | |
| 4w5j | AP5 | Adenylate kinase | / | 0.666 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.664 | |
| 4fyx | UTP | Aspartate carbamoyltransferase regulatory chain | / | 0.664 | |
| 2aky | AP5 | Adenylate kinase | / | 0.663 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.663 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.663 | |
| 2e8w | IPE | Geranylgeranyl pyrophosphate synthase | / | 0.661 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.661 | |
| 4df8 | 0L4 | DNA polymerase I, thermostable | 2.7.7.7 | 0.660 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.659 | |
| 1p3j | AP5 | Adenylate kinase | / | 0.659 | |
| 3dl0 | AP5 | Adenylate kinase | / | 0.657 | |
| 4ei7 | GDP | Plasmid replication protein RepX | / | 0.657 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.656 | |
| 1jsc | TPP | Acetolactate synthase catalytic subunit, mitochondrial | 2.2.1.6 | 0.655 | |
| 2o1o | RIS | Putative farnesyl pyrophosphate synthase | / | 0.655 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.655 | |
| 4xj3 | GTP | Cyclic GMP-AMP synthase | / | 0.655 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.653 | |
| 4nu0 | AP5 | Adenylate kinase | / | 0.653 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.653 | |
| 1wua | ATP | Actin, alpha skeletal muscle | / | 0.650 |