Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4zme ADN Myosin heavy chain kinase A 2.7.11.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4zme ADNMyosin heavy chain kinase A 2.7.11.7 0.845
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.796
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.768
3lmh ADPMyosin heavy chain kinase A 2.7.11.7 0.753
1iah ADPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.752
3lmi ATPMyosin heavy chain kinase A 2.7.11.7 0.725
3pdt ADPMyosin heavy chain kinase A 2.7.11.7 0.707
5e9e ANPMyosin heavy chain kinase A 2.7.11.7 0.707
4mv3 ACPBiotin carboxylase 6.3.4.14 0.701
1ia9 ANPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.699
4ffl ADPUncharacterized protein / 0.699
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.695
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.693
4ffr ATPUncharacterized protein / 0.691
4mv4 ACPBiotin carboxylase 6.3.4.14 0.691
4mv8 ACPBiotin carboxylase 6.3.4.14 0.691
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.688
1px2 ATPSynapsin-1 / 0.686
2vr1 ATFBiotin carboxylase 6.3.4.14 0.684
3g8d ADPBiotin carboxylase 6.3.4.14 0.684
4ffm ADPUncharacterized protein / 0.680
4nzo ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.680
2r7n ADP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.676
2vqd AP2Biotin carboxylase 6.3.4.14 0.675
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.673
3eps ATPIsocitrate dehydrogenase kinase/phosphatase / 0.673
3wnz ADPAlanine--anticapsin ligase / 0.668
3gub GUBDeath-associated protein kinase 1 2.7.11.1 0.667
4s34 ANPMitogen-activated protein kinase 1 2.7.11.24 0.665
1pk8 ATPSynapsin-1 / 0.663
4mam A12N5-carboxyaminoimidazole ribonucleotide synthase / 0.663
3t9a ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.662
4mv1 ADPBiotin carboxylase 6.3.4.14 0.659
3rv4 ADPBiotin carboxylase 6.3.4.14 0.658
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.657
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.656
4otp ADPSerine/threonine-protein kinase RIO1 2.7.11.1 0.656
5la6 ACPTubulin tyrosine ligase / 0.656
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.655
3hyo ADPPyridoxal kinase / 0.654
4wuc ANPDNA gyrase subunit B / 0.654
5jqw ADPN5-carboxyaminoimidazole ribonucleotide synthase / 0.654
4jlp ADPAdenylate kinase / 0.653
3wo0 ADPAlanine--anticapsin ligase / 0.652
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.652
5c1o ANPD-alanine--D-alanine ligase / 0.652
2p0a ANPSynapsin-3 / 0.651
3pnd FADFAD:protein FMN transferase / 0.651
4crs AGSSerine/threonine-protein kinase N2 2.7.11.13 0.650