2.060 Å
X-ray
2016-05-05
Name: | N5-carboxyaminoimidazole ribonucleotide synthase |
---|---|
ID: | Q5NGE8_FRATT |
AC: | Q5NGE8 |
Organism: | Francisella tularensis subsp. tularensis |
Reign: | Bacteria |
TaxID: | 177416 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 63.394 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.375 | 1130.625 |
% Hydrophobic | % Polar |
---|---|
29.55 | 70.45 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 64.8 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-22.228 | 10.3257 | -4.17241 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | CZ | ARG- 98 | 3.71 | 0 | Ionic (Protein Cationic) |
O1B | NH2 | ARG- 98 | 2.64 | 135.53 | H-Bond (Protein Donor) |
O1A | NZ | LYS- 138 | 3.31 | 145.15 | H-Bond (Protein Donor) |
N7 | NZ | LYS- 138 | 2.86 | 171.07 | H-Bond (Protein Donor) |
O1A | NZ | LYS- 138 | 3.31 | 0 | Ionic (Protein Cationic) |
O3B | N | ASP- 145 | 3.2 | 142.81 | H-Bond (Protein Donor) |
O3A | N | GLY- 146 | 3.49 | 129.96 | H-Bond (Protein Donor) |
O1A | NE2 | GLN- 149 | 3.46 | 166.61 | H-Bond (Protein Donor) |
N6 | OE1 | GLU- 175 | 2.99 | 157.84 | H-Bond (Ligand Donor) |
N6 | O | ALA- 176 | 3.25 | 161.55 | H-Bond (Ligand Donor) |
N1 | N | VAL- 178 | 3.11 | 158.62 | H-Bond (Protein Donor) |
O3' | OE2 | GLU- 183 | 2.73 | 140.39 | H-Bond (Ligand Donor) |
O3' | OE1 | GLU- 183 | 2.9 | 149.33 | H-Bond (Ligand Donor) |
O2' | OE1 | GLU- 183 | 3.43 | 168.41 | H-Bond (Ligand Donor) |
C2' | CE1 | PHE- 249 | 3.94 | 0 | Hydrophobic |