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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5jqw ADP N5-carboxyaminoimidazole ribonucleotide synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5jqw ADPN5-carboxyaminoimidazole ribonucleotide synthase / 0.970
2r86 ATP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.711
5c1p ADPD-alanine--D-alanine ligase / 0.710
4ffm ADPUncharacterized protein / 0.700
4ffl ADPUncharacterized protein / 0.690
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.689
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.684
1px2 ATPSynapsin-1 / 0.683
4ffr ATPUncharacterized protein / 0.683
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.681
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.678
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.677
4nzo ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.674
1cm8 ANPMitogen-activated protein kinase 12 / 0.671
5bpf ADPD-alanine--D-alanine ligase / 0.670
3g8d ADPBiotin carboxylase 6.3.4.14 0.668
3i12 ADPD-alanine--D-alanine ligase A 6.3.2.4 0.668
4mv3 ACPBiotin carboxylase 6.3.4.14 0.662
4c3p ACPAurora kinase A 2.7.11.1 0.660
3vpc ADPGlutamate--LysW ligase ArgX 6.3.2 0.656
4zme ADNMyosin heavy chain kinase A 2.7.11.7 0.654
2w5a ADPSerine/threonine-protein kinase Nek2 2.7.11.1 0.651
3tin ADPTtl protein / 0.650