Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4xz3 | COA | Acyl-CoA synthetase (NDP forming) |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
4xz3 | COA | Acyl-CoA synthetase (NDP forming) | / | 1.007 | |
4xyl | COA | Acyl-CoA synthetase (NDP forming) | / | 0.808 | |
5hbr | COA | Acyl-CoA synthetase (NDP forming) | / | 0.789 | |
4yak | ACO | Acyl-CoA synthetase (NDP forming) | / | 0.787 | |
4xym | COA | Acyl-CoA synthetase (NDP forming) | / | 0.763 | |
4yak | COA | Acyl-CoA synthetase (NDP forming) | / | 0.739 | |
2nu9 | COA | Succinate--CoA ligase [ADP-forming] subunit alpha | 6.2.1.5 | 0.677 |