2.400 Å
X-ray
2015-02-03
Name: | Acyl-CoA synthetase (NDP forming) |
---|---|
ID: | B1L3C9_KORCO |
AC: | B1L3C9 |
Organism: | Korarchaeum cryptofilum |
Reign: | Archaea |
TaxID: | 374847 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 95 % |
C | 5 % |
B-Factor: | 63.764 |
---|---|
Number of residues: | 43 |
Including | |
Standard Amino Acids: | 42 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | ACP |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.277 | 1211.625 |
% Hydrophobic | % Polar |
---|---|
44.29 | 55.71 |
According to VolSite |
HET Code: | COA |
---|---|
Formula: | C21H32N7O16P3S |
Molecular weight: | 763.502 g/mol |
DrugBank ID: | DB01992 |
Buried Surface Area: | 50.84 % |
Polar Surface area: | 426.11 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 21 |
H-Bond Donors: | 6 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 18 |
X | Y | Z |
---|---|---|
34.3274 | 10.639 | 91.6235 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O7A | OG | SER- 19 | 2.58 | 140.12 | H-Bond (Protein Donor) |
O2A | NZ | LYS- 24 | 3.49 | 0 | Ionic (Protein Cationic) |
O5A | NZ | LYS- 24 | 3.18 | 0 | Ionic (Protein Cationic) |
O5A | NZ | LYS- 24 | 3.18 | 167.13 | H-Bond (Protein Donor) |
CEP | CD1 | ILE- 25 | 3.59 | 0 | Hydrophobic |
C6P | CD1 | ILE- 25 | 3.62 | 0 | Hydrophobic |
O8A | ND2 | ASN- 46 | 2.75 | 146.37 | H-Bond (Protein Donor) |
C1B | CG | PRO- 47 | 4.29 | 0 | Hydrophobic |
C5B | CG1 | VAL- 75 | 4.36 | 0 | Hydrophobic |
CCP | CG | PRO- 76 | 4.48 | 0 | Hydrophobic |
N4P | O | ILE- 98 | 3.22 | 137.58 | H-Bond (Ligand Donor) |
CDP | CG2 | THR- 99 | 3.83 | 0 | Hydrophobic |
O9P | N | SER- 100 | 2.85 | 160.99 | H-Bond (Protein Donor) |
C2P | CB | PHE- 131 | 3.98 | 0 | Hydrophobic |
C2P | CZ | PHE- 144 | 3.57 | 0 | Hydrophobic |