1.950 Å
X-ray
2015-02-02
| Name: | Acyl-CoA synthetase (NDP forming) |
|---|---|
| ID: | B1L3C9_KORCO |
| AC: | B1L3C9 |
| Organism: | Korarchaeum cryptofilum |
| Reign: | Archaea |
| TaxID: | 374847 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 29.114 |
|---|---|
| Number of residues: | 42 |
| Including | |
| Standard Amino Acids: | 40 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.684 | 337.500 |
| % Hydrophobic | % Polar |
|---|---|
| 60.00 | 40.00 |
| According to VolSite | |

| HET Code: | COA |
|---|---|
| Formula: | C21H32N7O16P3S |
| Molecular weight: | 763.502 g/mol |
| DrugBank ID: | DB01992 |
| Buried Surface Area: | 49.38 % |
| Polar Surface area: | 426.11 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 21 |
| H-Bond Donors: | 6 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 18 |
| X | Y | Z |
|---|---|---|
| 35.9112 | 11.7874 | 85.1147 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O7A | OG | SER- 19 | 2.52 | 151.19 | H-Bond (Protein Donor) |
| O7A | NZ | LYS- 24 | 3.08 | 160.58 | H-Bond (Protein Donor) |
| O2A | NZ | LYS- 24 | 2.56 | 165 | H-Bond (Protein Donor) |
| O7A | NZ | LYS- 24 | 3.08 | 0 | Ionic (Protein Cationic) |
| O2A | NZ | LYS- 24 | 2.56 | 0 | Ionic (Protein Cationic) |
| C5B | CD | LYS- 24 | 4.35 | 0 | Hydrophobic |
| CEP | CG1 | ILE- 25 | 3.5 | 0 | Hydrophobic |
| O8A | ND2 | ASN- 46 | 2.83 | 173.56 | H-Bond (Protein Donor) |
| C1B | CG | PRO- 47 | 4.01 | 0 | Hydrophobic |
| C1B | CG1 | VAL- 75 | 4.44 | 0 | Hydrophobic |
| CCP | CG | PRO- 76 | 4.34 | 0 | Hydrophobic |
| C6P | CG2 | ILE- 98 | 4.31 | 0 | Hydrophobic |
| N4P | O | ILE- 98 | 3.21 | 156.79 | H-Bond (Ligand Donor) |
| CDP | CG2 | THR- 99 | 3.96 | 0 | Hydrophobic |
| O9P | N | SER- 100 | 2.81 | 177.45 | H-Bond (Protein Donor) |
| C6P | CB | SER- 100 | 4.17 | 0 | Hydrophobic |
| C2P | CB | PHE- 131 | 4.12 | 0 | Hydrophobic |
| S1P | CD2 | PHE- 131 | 4.2 | 0 | Hydrophobic |
| C2P | CZ | PHE- 144 | 3.65 | 0 | Hydrophobic |
| O4A | O | HOH- 636 | 2.97 | 163.58 | H-Bond (Protein Donor) |