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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xx9 ATP 3-phosphoinositide-dependent protein kinase 1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4xx9 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.848
4rqk ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.839
4rrv ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.807
3hrf ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.797
4rqv ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.775
3hrc ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.769
2biy ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.763
4aw0 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.742
4ct1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.742
1h1w ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.702
4ct2 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.696
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.692
2itv ANPEpidermal growth factor receptor 2.7.10.1 0.684
2itn ANPEpidermal growth factor receptor 2.7.10.1 0.683
3o7l ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.682
3a7h ATPSerine/threonine-protein kinase 24 2.7.11.1 0.678
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.676
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.674
5ack ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.673
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.666
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.665
4bl1 ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.664
4ekk ANPRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.662
3vjo ANPEpidermal growth factor receptor 2.7.10.1 0.659
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
4wbb ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
3gu6 ADPDeath-associated protein kinase 1 2.7.11.1 0.656
4crs AGSSerine/threonine-protein kinase N2 2.7.11.13 0.656
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
4ic7 ANPMitogen-activated protein kinase 7 2.7.11.24 0.654
1q24 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651
3vjn ANPEpidermal growth factor receptor 2.7.10.1 0.651
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.650