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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xj3 GTP Cyclic GMP-AMP synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4xj3 GTPCyclic GMP-AMP synthase / 1.129
4u03 GTPCyclic GMP-AMP synthase / 1.010
4xj4 3ATCyclic GMP-AMP synthase / 0.881
4u0m GTPCyclic GMP-AMP synthase / 0.854
4txz G2PCyclic GMP-AMP synthase / 0.794
2b51 UTPRNA editing complex protein MP57 / 0.755
3hiy UTPUncharacterized protein / 0.750
1r8b ATPCCA-adding enzyme 2.7.7.72 0.745
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.726
1r89 CTPCCA-adding enzyme 2.7.7.72 0.717
2q66 ATPPoly(A) polymerase 2.7.7.19 0.708
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.707
4fj5 DTPDNA-directed DNA polymerase / 0.701
4dtp DGTDNA-directed DNA polymerase / 0.700
2b56 UTPRNA editing complex protein MP57 / 0.698
2q0c CTPPoly(A) polymerase, putative / 0.695
3er9 3ATPoly(A) polymerase catalytic subunit 2.7.7.19 0.693
4m42 ATPDNA-directed DNA polymerase / 0.691
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.682
2q0f UTPPoly(A) polymerase, putative / 0.681
3ne6 DCPDNA-directed DNA polymerase / 0.681
4fjh DGTDNA-directed DNA polymerase / 0.678
4fjl DGTDNA-directed DNA polymerase / 0.678
4kgm ATPUncharacterized protein / 0.674
1r8c UTPCCA-adding enzyme 2.7.7.72 0.673
2q0d ATPPoly(A) polymerase, putative / 0.673
5itz GTPTubulin alpha-1B chain / 0.673
3sup DCPDNA-directed DNA polymerase / 0.671
4tuy GTPTubulin alpha-1B chain / 0.670
4ihj GTPTubulin alpha-1B chain / 0.668
5la6 GTPTubulin alpha-1B chain / 0.667
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.666
4khy TTPDNA-directed DNA polymerase / 0.665
4m3t ATPDNA-directed DNA polymerase / 0.664
3au2 DGTDNA polymerase beta family (X family) / 0.662
4xjx ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.660
3wbz ATPtRNA(His) guanylyltransferase {ECO:0000256|PIRNR:PIRNR028980} / 0.659
3q23 G2PVirion DNA-directed RNA polymerase / 0.658
4yvz 3ATDNA integrity scanning protein DisA / 0.658
4m3x ATPDNA-directed DNA polymerase / 0.657
4fhy 3ATTerminal uridylyltransferase cid1 / 0.655
4zol GTPTubulin alpha-1B chain / 0.655
5jqg GTPTubulin alpha-1B chain / 0.655
1cjv DADAdenylate cyclase type 2 / 0.654
1cjv DADAdenylate cyclase type 5 / 0.654
4fhp UTPTerminal uridylyltransferase cid1 / 0.654
4yj2 GTPTubulin alpha-1B chain / 0.653
4wbn GTPTubulin alpha-1B chain / 0.652
4iij GTPTubulin alpha-1B chain / 0.650