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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4wf0 FMN NPH1-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4wf0 FMNNPH1-1 / 1.150
2v0u FMNNPH1-1 / 1.064
2v1a FMNNPH1-1 / 1.045
5djt FMNNPH1-2 / 1.013
5efw FMNNPH1-1 / 1.008
4eep FMNPhototropin-2 2.7.11.1 0.993
4ees FMNPhototropin-2 2.7.11.1 0.984
5dju FMNNPH1-2 / 0.962
4eer FMNPhototropin-2 2.7.11.1 0.958
4eet FMNPhototropin-2 2.7.11.1 0.958
2z6d FMNPhototropin-2 2.7.11.1 0.954
3ue6 FMNAureochrome1 / 0.945
3hji FADVivid PAS protein VVD / 0.907
4eeu FMNPhototropin-2 2.7.11.1 0.903
4kuk RBFPutative blue-light photoreceptor / 0.899
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.887
3d72 FADVivid PAS protein VVD / 0.886
1n9l FMNPutative blue light receptor / 0.876
2pd7 FADVivid PAS protein VVD / 0.872
4kuo RBFPutative blue-light photoreceptor / 0.865
1g28 FMNPHY3 / 0.861
3hjk FADVivid PAS protein VVD / 0.858
1n9n FMNPutative blue light receptor / 0.847
2pd8 FADVivid PAS protein VVD / 0.844
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.813
2pr5 FMNBlue-light photoreceptor / 0.811
4hj3 FMNLOV protein / 0.809
2pdt FADVivid PAS protein VVD / 0.806
3is2 FADVivid PAS protein VVD / 0.787
4hj6 FMNLOV protein / 0.784
4hia FMNLOV protein / 0.781
5dkk FMNPredicted protein / 0.770
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.761
4hj4 FMNLOV protein / 0.756
4r3a RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.747
4hnb FMNLOV protein / 0.744
3p7n FMNLight-activated DNA-binding protein EL222 / 0.742
5j3w FMNSensory box protein / 0.724
3sw1 FMNSensory box protein / 0.720
2z6c FMNPhototropin-1 2.7.11.1 0.709
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.695
4yus FMNFamily 3 adenylate cyclase / 0.691
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.689
2fzn FADBifunctional protein PutA 1.5.5.2 0.688
3ad9 FADSubunit beta of sarcosine oxidase / 0.683
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.681
4hhd FMNPhototropin-1 2.7.11.1 0.680
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.675
3aeb FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.669
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.664
3sfe FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.663
5cho FADFlavin reductase / 0.663
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.662
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.658
5j4e FMNSensory box protein / 0.658
4uir FADOleate hydratase 4.2.1.53 0.656
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.654
4cnk FADL-amino acid oxidase / 0.654
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.654
1ng4 FADGlycine oxidase 1.4.3.19 0.652
5af7 FADAcyl-CoA dehydrogenase / 0.652
3nlc FADUncharacterized protein / 0.651
5c3j FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.651
4i6g FADCryptochrome-2 / 0.650