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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4u9y COA Alpha-tubulin N-acetyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 1.509
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 1.432
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 1.429
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 1.412
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 1.405
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 1.323
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 1.195
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 1.094
4h6u ACOAlpha-tubulin N-acetyltransferase 1 / 0.909
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.869
2cy2 ACOProbable acetyltransferase / 0.820
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.811
4h6z ACOAlpha-tubulin N-acetyltransferase 1 / 0.800
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.792
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.791
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.784
3k9u ACOSpermidine N(1)-acetyltransferase / 0.782
5kgp ACOPredicted acetyltransferase / 0.765
1pu9 COAHAT A1 / 0.760
4crz ACOPanD regulatory factor / 0.750
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.743
4kub COAUncharacterized protein / 0.735
5kf1 ACOPredicted acetyltransferase / 0.731
2ou2 ACOHistone acetyltransferase KAT5 / 0.729
1mja COAHistone acetyltransferase ESA1 / 0.728
1fy7 COAHistone acetyltransferase ESA1 / 0.726
1mj9 COAHistone acetyltransferase ESA1 / 0.726
3pgp ACOUncharacterized protein / 0.725
3f0a ACOSpermidine N(1)-acetyltransferase / 0.724
3r95 ACOMccE protein / 0.723
2cnt COARibosomal-protein-alanine acetyltransferase / 0.718
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.715
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.714
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.711
3r96 ACOMccE protein / 0.711
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.710
1mjb ACOHistone acetyltransferase ESA1 / 0.709
3bj7 COADiamine acetyltransferase 1 / 0.709
2ge3 ACOProbable acetyltransferase / 0.706
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.706
2giv ACOHistone acetyltransferase KAT8 / 0.704
5kf9 ACOPredicted acetyltransferase / 0.702
2x7b COAN-alpha-acetyltransferase 2.3.1 0.699
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.696
5kf8 ACOPredicted acetyltransferase / 0.692
1b87 ACOAac(6')-Ii protein / 0.689
1qsn COAHAT A1 / 0.688
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.687
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.685
3gya COAGCN5-related N-acetyltransferase / 0.683
2ozu ACOHistone acetyltransferase KAT6A / 0.682
1m1d LYXHAT A1 / 0.676
2b3v ACODiamine acetyltransferase 1 / 0.675
5kf2 ACOPredicted acetyltransferase / 0.672
5kgj ACOPredicted acetyltransferase / 0.672
2y0m ACOHistone acetyltransferase KAT8 / 0.669
2rc4 ACOHistone acetyltransferase KAT6A / 0.668
3zj0 ACOPutative acetyltransferase OgpAT / 0.666
1ghe ACOAcetyltransferase 2.3.1 0.664
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.664
3mgd ACOPredicted acetyltransferase / 0.664
3r1k COAN-acetyltransferase Eis / 0.662
5kf8 COAPredicted acetyltransferase / 0.661
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.659
4qvt ACOAcetyltransferase YpeA 2.3.1 0.657
1ib1 COTSerotonin N-acetyltransferase / 0.656
1j4j ACOAcetyltransferase 2.3.1 0.656
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.653
4cry ACOPanD regulatory factor / 0.651