Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4typ AP5 Adenylate kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4typ AP5Adenylate kinase / 1.550
4nu0 AP5Adenylate kinase / 1.059
3dkv AP5Adenylate kinase / 0.983
2qaj AP5Adenylate kinase / 0.978
2eu8 AP5Adenylate kinase / 0.949
2oo7 AP5Adenylate kinase / 0.935
4w5j AP5Adenylate kinase / 0.928
4mkg AP5Adenylate kinase / 0.922
3dl0 AP5Adenylate kinase / 0.913
2osb AP5Adenylate kinase / 0.874
4mkf AP5Adenylate kinase / 0.864
4qbf AP5Adenylate kinase / 0.844
3aky AP5Adenylate kinase / 0.821
1p3j AP5Adenylate kinase / 0.803
2aky AP5Adenylate kinase / 0.792
4qbh AP5Adenylate kinase / 0.780
1zio AP5Adenylate kinase / 0.743
4tyq AP5Adenylate kinase / 0.729
4mkh AP5Adenylate kinase / 0.716
2rgx AP5Adenylate kinase / 0.699
4x8l AP5Adenylate kinase / 0.685
1s3g AP5Adenylate kinase / 0.683
1svl ADPLarge T antigen 3.6.4 0.678
1ake AP5Adenylate kinase / 0.676
3hpr AP5Adenylate kinase / 0.676
3c15 GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.675
1azt GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.669
1cul GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.669
1aq2 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.665
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.665
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.661
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.661
1e4v AP5Adenylate kinase / 0.660
3bos CDPRegulatory inactivation of DnaA Hda protein / 0.660
4tle AGSCircadian clock protein kinase KaiC 2.7.11.1 0.657
2gvd GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.656
2apc UDMAlpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 0.654
3m0e ATPTranscriptional regulator (NtrC family) / 0.654
1r0z ATPCystic fibrosis transmembrane conductance regulator / 0.653
1u0h GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.653
1bcp ATPPertussis toxin subunit 4 / 0.651
1bcp ATPPertussis toxin subunit 5 / 0.651
2r59 PH0Leukotriene A-4 hydrolase 3.3.2.6 0.651
2zfa FMNLactate oxidase / 0.651
4oi2 ADPProtein clpf-1 / 0.651