Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rzu ADP Probable thymidylate kinase 2.7.4.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rzu ADPProbable thymidylate kinase 2.7.4.9 0.952
1um8 ADPATP-dependent Clp protease ATP-binding subunit ClpX / 0.728
1fnn ADPORC1-type DNA replication protein / 0.715
1q12 ATPMaltose/maltodextrin import ATP-binding protein MalK / 0.709
1svl ADPLarge T antigen 3.6.4 0.709
3zvm ADPBifunctional polynucleotide phosphatase/kinase 2.7.1.78 0.701
2jj1 ADPATP synthase subunit alpha, mitochondrial / 0.694
2jj1 ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.694
2v7q ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.690
3k0a ATPCircadian clock protein kinase KaiC 2.7.11.1 0.688
4pfp ADPUnconventional myosin-VI / 0.687
1mma ADPMyosin-2 heavy chain / 0.684
2o8b ADPDNA mismatch repair protein Msh2 / 0.679
2jiz ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.678
2jj2 ADPATP synthase subunit alpha, mitochondrial / 0.674
2jj2 ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.674
2gm1 ADPKinesin-like protein KIF11 / 0.672
5erm 210Fusicoccadiene synthase 4.2.3.43 0.672
1rrg GDPADP-ribosylation factor 1 / 0.668
2whx ADPGenome polyprotein 3.4.21.91 0.667
1xmv ADPProtein RecA / 0.663
3l1c ADPProtein claret segregational / 0.663
4gp6 ADPMetallophosphoesterase / 0.663
4hse ADPChaperone protein ClpB / 0.663
1in5 ADPHolliday junction ATP-dependent DNA helicase RuvB / 0.662
1h8h ADPATP synthase subunit alpha, mitochondrial / 0.661
1h8h ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.661
2eck ADPAdenylate kinase / 0.661
3bxz ADPProtein translocase subunit SecA / 0.661
4bzq ADPBifunctional enzyme CysN/CysC 2.7.1.25 0.661
1rzu ADPGlycogen synthase 1 2.4.1.21 0.660
2xau ADPPre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 3.6.4.13 0.660
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.656
4cf7 ADPAdenylate kinase / 0.655
2y65 ADPKinesin heavy chain / 0.654
2qen ADPWalker-Type ATPase / 0.653
4g01 GDPRas-related protein RABF2b / 0.653
1z0d GDPRas-related protein Rab-5C / 0.650
4yaf 2AMNADPH--cytochrome P450 reductase / 0.650