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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ri1 ACO UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ri1 ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202 1.163
3zj0 ACOPutative acetyltransferase OgpAT / 0.777
3exn ACOProbable acetyltransferase / 0.763
3f0a ACOSpermidine N(1)-acetyltransferase / 0.760
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.737
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.734
2vqy ACOAAC(6')-Ib / 0.732
2cy2 ACOProbable acetyltransferase / 0.731
3r95 ACOMccE protein / 0.721
3r96 ACOMccE protein / 0.720
3k9u ACOSpermidine N(1)-acetyltransferase / 0.718
2cns ACORibosomal-protein-alanine acetyltransferase / 0.717
4jxr ACOAcetyltransferase / 0.717
1qsm ACOHistone acetyltransferase HPA2 / 0.715
2ft0 ACOdTDP-fucosamine acetyltransferase / 0.709
4jwp ACOGCN5-related N-acetyltransferase / 0.707
1s7n COAAcetyl transferase / 0.704
1wwz ACOUncharacterized protein / 0.704
2a4n COAAac(6')-Ii protein / 0.697
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.696
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.695
3f8k COAUncharacterized protein / 0.693
5kf8 COAPredicted acetyltransferase / 0.686
1b87 ACOAac(6')-Ii protein / 0.685
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.682
1kuy COTSerotonin N-acetyltransferase / 0.681
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.680
1qsr ACOHAT A1 / 0.679
5kgp ACOPredicted acetyltransferase / 0.678
5kf2 ACOPredicted acetyltransferase / 0.674
3fbu COAAcetyltransferase, GNAT family / 0.673
3mgd ACOPredicted acetyltransferase / 0.672
1mj9 COAHistone acetyltransferase ESA1 / 0.669
2jdd ACOProbable acetyltransferase / 0.669
5kf8 ACOPredicted acetyltransferase / 0.669
5kgj ACOPredicted acetyltransferase / 0.669
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.668
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.667
1ib1 COTSerotonin N-acetyltransferase / 0.666
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.666
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.661
1xa4 COAL-carnitine CoA-transferase / 0.659
2bsw CAOProbable acetyltransferase / 0.657
2jdc CAOProbable acetyltransferase / 0.657
1cjw COTSerotonin N-acetyltransferase / 0.654
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.654
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.653
5kf1 ACOPredicted acetyltransferase / 0.653
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.652
1kuv CA5Serotonin N-acetyltransferase / 0.650