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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qvt ACO Acetyltransferase YpeA 2.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4qvt ACOAcetyltransferase YpeA 2.3.1 1.142
4kub COAUncharacterized protein / 0.823
4r3k COAN-alpha-acetyltransferase 2.3.1 0.807
3pgp ACOUncharacterized protein / 0.802
1ghe ACOAcetyltransferase 2.3.1 0.781
5kf9 ACOPredicted acetyltransferase / 0.780
2ou2 ACOHistone acetyltransferase KAT5 / 0.779
1j4j ACOAcetyltransferase 2.3.1 0.762
2x7b COAN-alpha-acetyltransferase 2.3.1 0.762
3mgd ACOPredicted acetyltransferase / 0.762
1qsr ACOHAT A1 / 0.760
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.754
2ozg COAGCN5-related N-acetyltransferase / 0.751
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.749
5kgj ACOPredicted acetyltransferase / 0.742
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.738
1qsm ACOHistone acetyltransferase HPA2 / 0.737
2bsw CAOProbable acetyltransferase / 0.737
2jdc CAOProbable acetyltransferase / 0.736
2jdd ACOProbable acetyltransferase / 0.736
2a4n COAAac(6')-Ii protein / 0.735
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.735
3te4 ACODopamine N-acetyltransferase / 0.734
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.731
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.730
5kf1 COAPredicted acetyltransferase / 0.725
1l0c COTSerotonin N-acetyltransferase / 0.723
4ava ACOAcetyltransferase Pat 2.3.1 0.722
1cjw COTSerotonin N-acetyltransferase / 0.717
1kuv CA5Serotonin N-acetyltransferase / 0.717
2r8v ACOAmino-acid acetyltransferase / 0.715
2y0m ACOHistone acetyltransferase KAT8 / 0.709
5kgp ACOPredicted acetyltransferase / 0.709
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.708
1ib1 COTSerotonin N-acetyltransferase / 0.707
3d2m COAAmino-acid acetyltransferase / 0.707
5kf8 ACOPredicted acetyltransferase / 0.707
2cns ACORibosomal-protein-alanine acetyltransferase / 0.706
4cry ACOPanD regulatory factor / 0.705
4crz ACOPanD regulatory factor / 0.705
1wwz ACOUncharacterized protein / 0.704
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 0.704
3exn ACOProbable acetyltransferase / 0.700
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 0.700
1mj9 COAHistone acetyltransferase ESA1 / 0.699
1n71 COAAac(6')-Ii protein / 0.699
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.699
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.698
3gy9 COAGCN5-related N-acetyltransferase / 0.696
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.694
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 0.692
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.691
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.689
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.687
1mjb ACOHistone acetyltransferase ESA1 / 0.686
1kux CA3Serotonin N-acetyltransferase / 0.685
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.685
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 0.685
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 0.684
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.683
2cnt COARibosomal-protein-alanine acetyltransferase / 0.683
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 0.683
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.681
2ozu ACOHistone acetyltransferase KAT6A / 0.680
2rc4 ACOHistone acetyltransferase KAT6A / 0.679
4b12 NHWGlycylpeptide N-tetradecanoyltransferase / 0.679
2zw4 COABleomycin acetyltransferase / 0.678
3r1k COAN-acetyltransferase Eis / 0.678
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 0.678
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.677
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.676
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.676
5kf9 COAPredicted acetyltransferase / 0.676
4b14 NHWGlycylpeptide N-tetradecanoyltransferase / 0.672
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.672
2cy2 ACOProbable acetyltransferase / 0.671
2zw5 COABleomycin acetyltransferase / 0.671
5c88 COAN-alpha-acetyltransferase / 0.671
1qsn COAHAT A1 / 0.670
5kf2 ACOPredicted acetyltransferase / 0.669
2giv ACOHistone acetyltransferase KAT8 / 0.668
3sxn COAN-acetyltransferase Eis / 0.666
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 0.661
5kf1 ACOPredicted acetyltransferase / 0.660
1pu9 COAHAT A1 / 0.658
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.658
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.657
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.657
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.656
2wpw ACOOrf14 / 0.654
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 0.654
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.654
1mja COAHistone acetyltransferase ESA1 / 0.653
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.653
5kf8 COAPredicted acetyltransferase / 0.652
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.651
4a30 MYAGlycylpeptide N-tetradecanoyltransferase / 0.651
5kf2 COAPredicted acetyltransferase / 0.650