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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qly FMN Enone reductase CLA-ER

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4qly FMNEnone reductase CLA-ER / 1.322
3eo8 FMNPutative nitroreductase / 1.048
3ge6 FMNNitroreductase / 1.026
3e39 FMNNitroreductase / 0.976
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.971
2wzv FMNNitroreductase NfnB / 0.919
2wzw FMNNitroreductase NfnB / 0.919
3koq FMNPutative nitroreductase / 0.919
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.889
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.887
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.880
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.876
4ttb FMNIodotyrosine deiodinase 1 / 0.855
4ttc FMNIodotyrosine deiodinase 1 / 0.850
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.845
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.844
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.831
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.831
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.829
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.827
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.817
3hj9 FMNUncharacterized protein / 0.815
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.812
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.808
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.804
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.802
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.801
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.799
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.794
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.788
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.783
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.773
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.772
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.769
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.762
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.760
3pxv FMNNitroreductase / 0.751
2fre FMNNAD(P)H-flavin oxidoreductase / 0.741
2bkj FMNNADPH-flavin oxidoreductase / 0.735
3eof FMNPutative oxidase / 0.723
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.721
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.717
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.713
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.712
5jsc FADPutative acyl-CoA dehydrogenase / 0.710
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.708
3rpe FADPutative modulator of drug activity / 0.703
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.702
2ifa FMNUncharacterized protein / 0.699
3oib FDAPutative acyl-CoA dehydrogenase / 0.699
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.698
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.688
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.686
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.686
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.685
2z1q FADAcyl-CoA dehydrogenase / 0.684
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.684
3p4t FAOPutative acyl-CoA dehydrogenase / 0.681
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.680
2byc FMNBlue-light receptor of the BLUF-family / 0.679
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.678
2b3d FADModulator of drug activity B / 0.678
3nix FADFlavoprotein/dehydrogenase / 0.678
2nli FMNLactate oxidase / 0.676
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.676
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.676
1eje FMNProtein MTH_152 / 0.675
4f07 FADStyrene monooxygenase component 2 / 0.675
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.672
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.672
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.671
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.669
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.668
2zfa FMNLactate oxidase / 0.664
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.662
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.661
3of4 FMNNitroreductase / 0.661
5hsa FASAlcohol oxidase 1 1.1.3.13 0.659
4r81 FMNPredicted NADH dehydrogenase / 0.658
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.657
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.655
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.655
1nb9 RBFRiboflavin kinase 2.7.1.26 0.654
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.654
4tmb FMNOld yellow enzyme / 0.654
3au2 DGTDNA polymerase beta family (X family) / 0.653
1a8p FADFerredoxin--NADP reductase / 0.652