Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4p6w MOF Glucocorticoid receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4p6w MOFGlucocorticoid receptor / 1.092
1m2z DEXGlucocorticoid receptor / 0.828
1sr7 MOFProgesterone receptor / 0.815
1p93 DEXGlucocorticoid receptor / 0.804
3mnp DEXGlucocorticoid receptor / 0.775
3mne DEXGlucocorticoid receptor / 0.769
3mno DEXGlucocorticoid receptor / 0.733
2a3i C0RMineralocorticoid receptor / 0.731
4udc DEXGlucocorticoid receptor / 0.708
4p6x HCYGlucocorticoid receptor / 0.705
2aa7 1CAMineralocorticoid receptor / 0.693
1ya3 STRMineralocorticoid receptor / 0.680
2aax PDNMineralocorticoid receptor / 0.671
4e5f 0N7Polymerase acidic protein / 0.663
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
2abi 1CAMineralocorticoid receptor / 0.658
2aa2 AS4Mineralocorticoid receptor / 0.654