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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lva 20M Nicotinamide phosphoribosyltransferase 2.4.2.12

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4lva 20MNicotinamide phosphoribosyltransferase 2.4.2.12 1.083
4lww LWWNicotinamide phosphoribosyltransferase 2.4.2.12 0.806
4m6p 20RNicotinamide phosphoribosyltransferase 2.4.2.12 0.773
4m6q 20TNicotinamide phosphoribosyltransferase 2.4.2.12 0.772
4kfn 1QRNicotinamide phosphoribosyltransferase 2.4.2.12 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4kfo 1QSNicotinamide phosphoribosyltransferase 2.4.2.12 0.686
4o28 1QSNicotinamide phosphoribosyltransferase 2.4.2.12 0.673
4kfp 1R7Nicotinamide phosphoribosyltransferase 2.4.2.12 0.664
4e5f 0N7Polymerase acidic protein / 0.660
4lts LTSNicotinamide phosphoribosyltransferase 2.4.2.12 0.658