scPDB - 4lts entry

Protein Data Bank Entry:

PDB ID : 4lts

Resolution :1.690 Å

Experimental Method : X-ray

Deposition Date : 2013-07-23

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Nicotinamide phosphoribosyltransferase
ID:	NAMPT_HUMAN
AC:	P43490
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.4.2.12

Chains:

Chain Name:	Percentage of Residues within binding site
A	12 %
B	88 %

Ligand binding site composition:

B-Factor:	10.374
Number of residues:	49
Including
Standard Amino Acids:	41
Non Standard Amino Acids:	0
Water Molecules:	8
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.677	1171.125

% Hydrophobic	% Polar
39.77	60.23
According to VolSite

Ligand :

HET Code:	LTS
Formula:	C21H17F3N5O3S
Molecular weight:	476.452 g/mol
DrugBank ID:	-
Buried Surface Area:	72.53 %
Polar Surface area:	126.09 Å2

Number of
H-Bond Acceptors:	7
H-Bond Donors:	3
Rings:	3
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	1
Rule of Five Violation:	1
Rotatable Bonds:	9

Mass center Coordinates

X	Y	Z
10.3637	-4.43897	44.2344

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C24	CB	ASP- 16	4.22	0	Hydrophobic	false
C16	CB	TYR- 18	4.29	0	Hydrophobic	false
F32	CD1	TYR- 188	3.27	0	Hydrophobic	false
C11	CB	HIS- 191	4.03	0	Hydrophobic	false
C24	CB	PHE- 193	4.06	0	Hydrophobic	false
DuAr	DuAr	PHE- 193	3.77	0	Aromatic Face/Face	false
C24	CB	ASP- 219	4.08	0	Hydrophobic	false
N17	OD1	ASP- 219	3.06	150.36	H-Bond (Ligand Donor)	false
N22	OD2	ASP- 219	2.68	162.94	H-Bond (Ligand Donor)	false
F32	CG	TYR- 240	4.09	0	Hydrophobic	false
C30	CB	TYR- 240	4.17	0	Hydrophobic	false
C6	CG2	VAL- 242	4.4	0	Hydrophobic	false
C30	CG1	VAL- 242	4.35	0	Hydrophobic	false
F33	CB	VAL- 242	4.08	0	Hydrophobic	false
C15	CG2	VAL- 242	3.48	0	Hydrophobic	false
C2	CG1	VAL- 242	3.82	0	Hydrophobic	false
C14	CG2	VAL- 242	3.25	0	Hydrophobic	false
C16	CB	ALA- 244	3.58	0	Hydrophobic	false
C1	CB	PRO- 273	4.2	0	Hydrophobic	false
N21	OG	SER- 275	2.67	152.01	H-Bond (Protein Donor)	false
C14	CB	SER- 275	3.6	0	Hydrophobic	false
C15	CD1	ILE- 309	4.05	0	Hydrophobic	false
C6	CD1	ILE- 309	3.53	0	Hydrophobic	false
C10	CD1	ILE- 351	3.71	0	Hydrophobic	false