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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lts LTS Nicotinamide phosphoribosyltransferase 2.4.2.12

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4lts LTSNicotinamide phosphoribosyltransferase 2.4.2.12 1.142
4lww LWWNicotinamide phosphoribosyltransferase 2.4.2.12 0.880
4m6p 20RNicotinamide phosphoribosyltransferase 2.4.2.12 0.829
4m6q 20TNicotinamide phosphoribosyltransferase 2.4.2.12 0.827
4kfn 1QRNicotinamide phosphoribosyltransferase 2.4.2.12 0.818
4o28 1QSNicotinamide phosphoribosyltransferase 2.4.2.12 0.788
4kfo 1QSNicotinamide phosphoribosyltransferase 2.4.2.12 0.762
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4kfp 1R7Nicotinamide phosphoribosyltransferase 2.4.2.12 0.707
2gvj DGBNicotinamide phosphoribosyltransferase 2.4.2.12 0.680
4lva 20MNicotinamide phosphoribosyltransferase 2.4.2.12 0.658