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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lj7 MNT Chaperone protein ClpB

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4lj7 MNTChaperone protein ClpB / 1.157
4lja ACPChaperone protein ClpB / 0.760
4fcw ADPChaperone protein ClpB / 0.758
4lj6 ACPChaperone protein ClpB / 0.743
4lj9 ACPChaperone protein ClpB / 0.723
2xsz ATPRuvB-like 2 3.6.4.12 0.712
2c9o ADPRuvB-like 1 3.6.4.12 0.692
3cf0 ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.692
2c98 ADPPsp operon transcriptional activator / 0.687
2gm1 ADPKinesin-like protein KIF11 / 0.681
4b7b ADPKinesin-like protein KIF11 / 0.681
4hse ADPChaperone protein ClpB / 0.679
4lj5 ADPChaperone protein ClpB / 0.677
4fd2 ADPChaperone protein ClpB / 0.675
3ews ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.668
1q12 ATPMaltose/maltodextrin import ATP-binding protein MalK / 0.665
2ax4 ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 2.7.1.25 0.663
4d81 ADPAAA ATPase, central domain protein / 0.663
4ma4 ADP6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 2.7.1.105 0.662
1w5s ADPORC1-type DNA replication protein 2 / 0.661
1xnj ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25 0.651
4ag5 ADPType IV secretory pathway VirB4 components-like protein / 0.651
1um8 ADPATP-dependent Clp protease ATP-binding subunit ClpX / 0.650