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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kni E1E Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kni E1ECarbonic anhydrase 2 4.2.1.1 1.027
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.788
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.786
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.777
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.773
3sax E50Carbonic anhydrase 2 4.2.1.1 0.771
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.756
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.754
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.744
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.736
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.734
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.729
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.724
3mho J43Carbonic anhydrase 2 4.2.1.1 0.715
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.707
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.701
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.700
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.695
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.694
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.684
1okn STBCarbonic anhydrase 2 4.2.1.1 0.682
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.680
4uov AZMCarbonate dehydratase / 0.675
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.674
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.671
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.671
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.670
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.667
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.660
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.659
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.657
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.657
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.655
3hku TORCarbonic anhydrase 2 4.2.1.1 0.654
3myq E27Carbonic anhydrase 2 4.2.1.1 0.654
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.652