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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k97 ATP Cyclic GMP-AMP synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4k97 ATPCyclic GMP-AMP synthase / 1.025
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.787
2q66 ATPPoly(A) polymerase 2.7.7.19 0.766
4xj4 3ATCyclic GMP-AMP synthase / 0.731
4u03 GTPCyclic GMP-AMP synthase / 0.724
4fj5 DTPDNA-directed DNA polymerase / 0.723
4dtp DGTDNA-directed DNA polymerase / 0.715
2b51 UTPRNA editing complex protein MP57 / 0.709
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.708
1r8c UTPCCA-adding enzyme 2.7.7.72 0.700
3g6x DGTDNA polymerase iota 2.7.7.7 0.700
4m42 ATPDNA-directed DNA polymerase / 0.700
3ne6 DCPDNA-directed DNA polymerase / 0.699
4dto DCPDNA-directed DNA polymerase / 0.695
4df4 0L3DNA polymerase I, thermostable 2.7.7.7 0.689
4dtj TTPDNA-directed DNA polymerase / 0.688
4fjl DGTDNA-directed DNA polymerase / 0.678
2q0c CTPPoly(A) polymerase, putative / 0.676
5a2w AGSMitochondrial poly(A) polymerase / 0.676
3q23 G2PVirion DNA-directed RNA polymerase / 0.675
2nom DUTPoly(A) polymerase, putative / 0.672
4fjj TTPDNA-directed DNA polymerase / 0.672
4fk4 DGTDNA-directed DNA polymerase / 0.672
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.669
1cjv DADAdenylate cyclase type 2 / 0.667
1cjv DADAdenylate cyclase type 5 / 0.667
4fjm DCPDNA-directed DNA polymerase / 0.666
2ikf UTPPoly(A) polymerase, putative / 0.664
2b56 UTPRNA editing complex protein MP57 / 0.660
4dtx TTPDNA-directed DNA polymerase / 0.659
4txz G2PCyclic GMP-AMP synthase / 0.658
2q0d ATPPoly(A) polymerase, putative / 0.657
4df8 0L4DNA polymerase I, thermostable 2.7.7.7 0.657
4kgk GTPUncharacterized protein / 0.656
1fa0 3ATPoly(A) polymerase 2.7.7.19 0.654
3sup DCPDNA-directed DNA polymerase / 0.654
3ova APCCCA-adding enzyme 2.7.7.72 0.652
3wbz ATPtRNA(His) guanylyltransferase {ECO:0000256|PIRNR:PIRNR028980} / 0.652
4fjh DGTDNA-directed DNA polymerase / 0.651
3otb DGTProbable tRNA(His) guanylyltransferase 2.7.7.79 0.650
4xul GTPUncharacterized protein mg662 / 0.650