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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k5g Q13 Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.959
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.857
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.843
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.838
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.806
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.806
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.803
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.797
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.789
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.788
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.787
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.784
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.780
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.776
3n5w XFJNitric oxide synthase, brain 1.14.13.39 0.774
3jws JI4Nitric oxide synthase, brain 1.14.13.39 0.773
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.770
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.770
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.767
3n65 XFJNitric oxide synthase, brain 1.14.13.39 0.766
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.763
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.762
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.761
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.761
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.761
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.760
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.757
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.754
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.751
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 0.750
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.747
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.744
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.740
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.739
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.739
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.736
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.735
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.732
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.727
4lwb QJ8Nitric oxide synthase oxygenase 1.14.13.165 0.727
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.726
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.725
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.719
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.713
3n66 XFNNitric oxide synthase, brain 1.14.13.39 0.709
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.708
3n60 XFNNitric oxide synthase, brain 1.14.13.39 0.704
3nnz 59WNitric oxide synthase, brain 1.14.13.39 0.704
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.703
3rql X2DNitric oxide synthase, brain 1.14.13.39 0.703
3rqm X2ENitric oxide synthase, brain 1.14.13.39 0.702
3nlo JSRNitric oxide synthase, brain 1.14.13.39 0.696
3n63 XFNNitric oxide synthase, brain 1.14.13.39 0.695
3ufv HW9Nitric oxide synthase, brain 1.14.13.39 0.693
4cx5 HW8Nitric oxide synthase, brain 1.14.13.39 0.691
1m9j CLWNitric oxide synthase, endothelial 1.14.13.39 0.684
4ug7 1EVNitric oxide synthase oxygenase 1.14.13.165 0.683
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.679
3dqr JI2Nitric oxide synthase, brain 1.14.13.39 0.677
4lwa Q13Nitric oxide synthase oxygenase 1.14.13.165 0.677
3nlz 3XDNitric oxide synthase, brain 1.14.13.39 0.676
4cx3 HW8Nitric oxide synthase, brain 1.14.13.39 0.673
3ufw HW0Nitric oxide synthase, brain 1.14.13.39 0.670
3svp JK5Nitric oxide synthase, brain 1.14.13.39 0.669
3png 8CXNitric oxide synthase, brain 1.14.13.39 0.665
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.665
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.661
3uft HW7Nitric oxide synthase, brain 1.14.13.39 0.658
3rqj Y2BNitric oxide synthase, brain 1.14.13.39 0.656
3ufu HW8Nitric oxide synthase, brain 1.14.13.39 0.655
3jwt JI5Nitric oxide synthase, brain 1.14.13.39 0.650