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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jtc NAP Voltage-gated potassium channel subunit beta-2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jtc NAPVoltage-gated potassium channel subunit beta-2 / 1.414
4jtd NAPVoltage-gated potassium channel subunit beta-2 / 1.329
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 1.024
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 0.969
4jta NAPVoltage-gated potassium channel subunit beta-2 / 0.951
3lut NAPVoltage-gated potassium channel subunit beta-2 / 0.939
1qrq NDPVoltage-gated potassium channel subunit beta-2 / 0.930
1lqa NDPProtein tas / 0.852
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.744
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.734
1hqt NAPAlcohol dehydrogenase [NADP(+)] 1.1.1.2 0.705
1og6 NAPOxidoreductase YdhF 1 0.692
1r38 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.689
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.678
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.678
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.677
1sm9 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.673
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.670
1ah4 NAPAldose reductase 1.1.1.21 0.667
1q5m NDPProstaglandin-E(2) 9-reductase 1.1.1.189 0.664
4jtq NAPAldo-keto reductase family 1 member C2 / 0.657
2iq0 NAPAldose reductase 1.1.1.21 0.656
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.654
1k8c NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.653
4h8n NDPNADPH-dependent conjugated polyketone reductase C2 / 0.652
1vp5 NAPOxidoreductase, aldo/keto reductase family / 0.651